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Report for CCDS17689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17689.1 Public Mus musculus 3 Tshb 23 108 98 CCDS HistoryNCBI Gene:22094Re-query CCDS DB by CCDS ID:17689.1Re-query CCDS DB by GeneID:22094See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 17689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029450.9 ENSMUSP00000029450.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029450.9Link to Ensembl Protein Viewer:ENSMUSP00000029450.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029450Re-query CCDS DB by Protein ID:ENSMUSP00000029450
Original member Current member EBI ENSMUST00000170856.5 ENSMUSP00000127165.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170856.5Link to Ensembl Protein Viewer:ENSMUSP00000127165.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170856Re-query CCDS DB by Protein ID:ENSMUSP00000127165
Original member Current member EBI ENSMUST00000172026.7 ENSMUSP00000128440.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172026.7Link to Ensembl Protein Viewer:ENSMUSP00000128440.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172026Re-query CCDS DB by Protein ID:ENSMUSP00000128440
Original member Current member EBI ENSMUST00000197322.1 ENSMUSP00000142670.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197322.1Link to Ensembl Protein Viewer:ENSMUSP00000142670.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197322Re-query CCDS DB by Protein ID:ENSMUSP00000142670
Original member Current member EBI ENSMUST00000200041.4 ENSMUSP00000142782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200041.4Link to Ensembl Protein Viewer:ENSMUSP00000142782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200041Re-query CCDS DB by Protein ID:ENSMUSP00000142782
Original member Current member NCBI NM_001165939.1 NP_001159411.1 Accepted alive Link to Nucleotide Sequence:NM_001165939.1Link to Protein Sequence:NP_001159411.1Re-query CCDS DB by Nucleotide ID:NM_001165939Re-query CCDS DB by Protein ID:NP_001159411Link to BLAST:NP_001159411.1
Original member Current member NCBI NM_001165940.1 NP_001159412.1 Accepted alive Link to Nucleotide Sequence:NM_001165940.1Link to Protein Sequence:NP_001159412.1Re-query CCDS DB by Nucleotide ID:NM_001165940Re-query CCDS DB by Protein ID:NP_001159412Link to BLAST:NP_001159412.1
Original member Current member NCBI NM_009432.2 NP_033458.2 Accepted alive Link to Nucleotide Sequence:NM_009432.2Link to Protein Sequence:NP_033458.2Re-query CCDS DB by Nucleotide ID:NM_009432Re-query CCDS DB by Protein ID:NP_033458Link to BLAST:NP_033458.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159411.1 138 P12656 138 99.2754% 0 1
NP_001159412.1 138 P12656 138 99.2754% 0 1
NP_033458.2 138 P12656 138 99.2754% 0 1

Chromosomal Locations for CCDS 17689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 102777470 102777724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102778150 102778311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (417 nt):
ATGAGTGCTGCCGTCCTCCTCTCCGTGCTTTTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTGTATTC
CCACTGAGTATACAATGTACGTGGATAGGAGAGAGTGTGCCTACTGCCTGACCATCAACACCACCATCTG
TGCTGGGTATTGTATGACACGGGATATCAATGGCAAACTGTTTCTTCCCAAATATGCACTCTCTCAGGAT
GTCTGTACATACAGAGACTTCATCTACAGAACGGTGGAAATACCAGGATGCCCGCACCATGTTACTCCTT
ATTTCTCCTTCCCTGTCGCCATAAGCTGCAAGTGTGGCAAGTGTAATACTGACAACAGTGACTGCATACA
CGAGGCTGTCAGAACCAACTACTGCACCAAGCCGCAGTCTTTCTATCTGGGGGGATTTTCTGTTTAA

Translation (138 aa):
MSAAVLLSVLFALACGQAASFCIPTEYTMYVDRRECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQD
VCTYRDFIYRTVEIPGCPHHVTPYFSFPVAISCKCGKCNTDNSDCIHEAVRTNYCTKPQSFYLGGFSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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