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Report for CCDS45604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45604.1 Public Homo sapiens 17 FXR2 24 110 108 CCDS HistoryNCBI Gene:9513Re-query CCDS DB by CCDS ID:45604.1Re-query CCDS DB by GeneID:9513See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45604.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000250113.12 ENSP00000250113.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000250113.12Link to Ensembl Protein Viewer:ENSP00000250113.7Re-query CCDS DB by Nucleotide ID:ENST00000250113Re-query CCDS DB by Protein ID:ENSP00000250113
Original member Current member NCBI NM_004860.4 NP_004851.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004860.4Link to Protein Sequence:NP_004851.2Re-query CCDS DB by Nucleotide ID:NM_004860Re-query CCDS DB by Protein ID:NP_004851Link to BLAST:NP_004851.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004851.2 673 P51116 673 100% 0 0

Chromosomal Locations for CCDS 45604.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7591830 7591925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7592254 7592354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7592504 7592599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7592694 7592894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7592984 7593181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7593403 7593625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7593918 7594004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7594238 7594347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7594679 7594757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7595824 7595994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7601409 7601525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7602909 7603002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7603757 7603905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7604009 7604080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7605645 7605738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7606097 7606149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7614452 7614532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2022 nt):
ATGGGCGGCCTGGCCTCTGGGGGGGATGTGGAGCCGGGACTGCCCGTCGAGGTGCGCGGCTCCAACGGGG
CCTTCTACAAGGGCTTTGTGAAGGATGTCCATGAAGACTCTGTCACCATCTTCTTTGAAAACAACTGGCA
GAGTGAGAGACAAATTCCTTTTGGGGATGTCCGGCTACCACCTCCAGCTGACTATAATAAGGAGATCACA
GAAGGGGATGAAGTGGAGGTTTATTCTCGAGCCAATGAACAGGAACCTTGTGGCTGGTGGCTGGCCCGGG
TGCGGATGATGAAGGGAGATTTCTATGTCATTGAATATGCTGCCTGTGATGCCACCTACAATGAAATTGT
TACCCTGGAGCGACTTCGGCCAGTTAATCCCAATCCCCTTGCAACCAAAGGCAGCTTCTTCAAGGTTACC
ATGGCTGTGCCCGAGGATCTGAGAGAAGCCTGCTCCAATGAAAACGTCCATAAAGAGTTCAAGAAAGCCC
TGGGAGCCAACTGCATCTTTCTCAACATCACAAACAGTGAGCTCTTCATTCTGTCAACCACAGAAGCCCC
TGTGAAGCGAGCATCTCTGCTGGGTGATATGCATTTCCGAAGCCTGCGCACCAAACTGCTACTTATGTCC
CGCAATGAAGAAGCTACCAAGCACCTAGAGACAAGCAAGCAGTTGGCAGCAGCCTTCCAAGAGGAGTTCA
CAGTGCGAGAGGACCTGATGGGACTGGCAATTGGGACTCACGGTGCCAACATCCAGCAGGCCCGAAAAGT
ACCTGGGGTGACCGCCATTGAGTTGGGTGAAGAGACCTGCACTTTCCGCATCTATGGGGAGACTCCCGAG
GCTTGCCGACAGGCCCGAAGCTACCTTGAGTTTTCTGAGGACTCAGTGCAAGTGCCCAGGAACCTGGTTG
GCAAAGTGATTGGAAAGAACGGGAAAGTGATCCAGGAGATTGTGGATAAATCTGGTGTGGTGAGGGTTCG
AGTGGAAGGTGATAATGACAAGAAGAACCCCAGGGAGGAGGGAATGGTTCCCTTCATTTTTGTTGGCACC
CGAGAGAACATCAGCAATGCCCAGGCTTTGCTGGAGTATCACCTCTCCTACCTGCAGGAGGTAGAGCAGC
TTCGCTTGGAGAGGCTACAAATTGATGAGCAGCTTCGGCAGATTGGGCTGGGCTTTCGCCCTCCTGGGAG
TGGGCGGGGCAGCGGTGGCAGCGACAAGGCTGGATATAGCACTGATGAGAGCTCCTCCTCCTCCCTCCAT
GCGACTCGAACCTATGGGGGCAGCTATGGGGGCCGTGGCCGTGGCCGGAGGACAGGCGGTCCTGCCTATG
GCCCCAGCTCAGATGTGTCTACAGCTTCAGAGACTGAGTCAGAGAAGAGAGAGGAGCCCAACCGAGCTGG
GCCTGGCGACAGGGATCCCCCAACCCGAGGGGAAGAAAGCCGGAGGCGGCCGACTGGGGGCCGGGGTAGG
GGACCCCCACCTGCCCCCCGGCCCACTTCGAGATACAATTCTTCATCTATTAGCTCAGTGCTGAAGGATC
CAGACAGTAATCCCTACAGCCTATTGGACACGTCTGAACCAGAGCCCCCGGTTGATTCAGAACCTGGGGA
ACCCCCCCCAGCAAGTGCCAGGCGCCGCCGCTCCCGCCGCCGCCGCACTGATGAAGACAGGACCGTCATG
GATGGAGGCCTGGAATCAGATGGGCCCAACATGACAGAGAATGGCCTGGAAGATGAATCAAGACCTCAAC
GTCGTAATCGCAGCCGCCGCCGCCGTAACCGTGGTAATCGGACTGATGGCTCTATCAGTGGAGACCGCCA
GCCAGTGACTGTGGCTGACTATATCTCACGAGCAGAGTCTCAGAGCCGCCAGAGGCCACCCCTGGAACGC
ACTAAACCCTCAGAAGACTCTCTTTCAGGACAGAAGGGTGACTCTGTCAGCAAGCTTCCTAAGGGCCCCT
CGGAGAATGGGGAGCTCTCCGCCCCCTTGGAGTTGGGTAGTATGGTGAATGGGGTTTCATAA

Translation (673 aa):
MGGLASGGDVEPGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEIT
EGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSFFKVT
MAVPEDLREACSNENVHKEFKKALGANCIFLNITNSELFILSTTEAPVKRASLLGDMHFRSLRTKLLLMS
RNEEATKHLETSKQLAAAFQEEFTVREDLMGLAIGTHGANIQQARKVPGVTAIELGEETCTFRIYGETPE
ACRQARSYLEFSEDSVQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRVEGDNDKKNPREEGMVPFIFVGT
RENISNAQALLEYHLSYLQEVEQLRLERLQIDEQLRQIGLGFRPPGSGRGSGGSDKAGYSTDESSSSSLH
ATRTYGGSYGGRGRGRRTGGPAYGPSSDVSTASETESEKREEPNRAGPGDRDPPTRGEESRRRPTGGRGR
GPPPAPRPTSRYNSSSISSVLKDPDSNPYSLLDTSEPEPPVDSEPGEPPPASARRRRSRRRRTDEDRTVM
DGGLESDGPNMTENGLEDESRPQRRNRSRRRRNRGNRTDGSISGDRQPVTVADYISRAESQSRQRPPLER
TKPSEDSLSGQKGDSVSKLPKGPSENGELSAPLELGSMVNGVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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