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Report for CCDS21975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21975.1 Public Mus musculus 7 Or2j6 23 108 98 CCDS HistoryNCBI Gene:258955Re-query CCDS DB by CCDS ID:21975.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080153.3 ENSMUSP00000079048.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080153.3Link to Ensembl Protein Viewer:ENSMUSP00000079048.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000080153Re-query CCDS DB by Protein ID:ENSMUSP00000079048
Original member Current member EBI ENSMUST00000217167.1 ENSMUSP00000149942.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217167.1Link to Ensembl Protein Viewer:ENSMUSP00000149942.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217167Re-query CCDS DB by Protein ID:ENSMUSP00000149942
Original member Current member EBI ENSMUST00000216053.1 ENSMUSP00000150424.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216053.1Link to Ensembl Protein Viewer:ENSMUSP00000150424.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216053Re-query CCDS DB by Protein ID:ENSMUSP00000150424
Original member Current member NCBI NM_146953.1 NP_667164.1 Accepted alive Link to Nucleotide Sequence:NM_146953.1Link to Protein Sequence:NP_667164.1Re-query CCDS DB by Nucleotide ID:NM_146953Re-query CCDS DB by Protein ID:NP_667164Link to BLAST:NP_667164.1

Chromosomal Locations for CCDS 21975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140400130 140401044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGAATGGGACACTGGTCACTGAGTTCCTCATCCTGGGATTCTCAGATATGCCTCACCTTCGGATACTAC
TTTTCCTCAGCTTCCTATGCCTATACATGGCTGCAGTCTCAGGAAACCTGCTCATTATGGTGACAATCAG
TGCCAGCCCAACCCTGCATACCCCTATGTACTTCTTCCTGGTCAACCTGGCTGTGGTGGACATCCTTTGC
ACCTCCACCATCCTACCCAAGCTACTGGACACCATGGTGGGGGGAAGGACCATCTCTTACGGGGGCTGCA
TGGCCCAGCTCTTCTTCTTCACATGGTCACTGGGGGTGGAGCTTCTACTCTTCTCAGCTATGGCCTATGA
CCGCTTTGTGGCCATCTGCTGCCCTCTGCATTATAGTACCTGGATGGGCCCCAGAGTGTGTGCATTTCTG
GCTGGCATTGTCTGGGCTATCAGCCTGACTAACACCAGCATAAACTCAAGCCTGGTGCTACGTCTACCAT
TCTGCAGCTCCAATGTGGTTGAGCACTTCTTCTGTGAGATTCCCCCACTGTTGAAGCTCTCTTGTGCTCC
AACACAATTGAACGAGGCCATGGCTTTCGCTGCAGATGTGTTCCTGGCTGTAGGGAACTTCTCTGTGATC
ATCCTCTCCTATGGCTTTATTGTGGCCAGCATCCTGAAGATCCGCTCAGCTGAGGGCAAGCAACGAGCCT
TCTCCACCTGCTCTGCACACCTCATCGTGGTCACCATGTACTACTCCACTGTCATCTACACCTACATTCG
CCCTTCATCCAGCTACTCACTGAACAAGGACAAGGTGGTGTCCATCATCTACACCTCAGTGGCACCCACC
TTGAACCCTCTCATCTACACTCTGAGGAATAAGGATGTCAAAGTTGCACTCCGGAGACTTTTCTCCTGCT
GCTGA

Translation (304 aa):
MNGTLVTEFLILGFSDMPHLRILLFLSFLCLYMAAVSGNLLIMVTISASPTLHTPMYFFLVNLAVVDILC
TSTILPKLLDTMVGGRTISYGGCMAQLFFFTWSLGVELLLFSAMAYDRFVAICCPLHYSTWMGPRVCAFL
AGIVWAISLTNTSINSSLVLRLPFCSSNVVEHFFCEIPPLLKLSCAPTQLNEAMAFAADVFLAVGNFSVI
ILSYGFIVASILKIRSAEGKQRAFSTCSAHLIVVTMYYSTVIYTYIRPSSSYSLNKDKVVSIIYTSVAPT
LNPLIYTLRNKDVKVALRRLFSCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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