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Report for CCDS30473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30473.1 Public Mus musculus X Smc1a 23 108 98 CCDS HistoryNCBI Gene:24061Re-query CCDS DB by CCDS ID:30473.1Re-query CCDS DB by GeneID:24061See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30473.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045312.5 ENSMUSP00000044645.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045312.5Link to Ensembl Protein Viewer:ENSMUSP00000044645.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045312Re-query CCDS DB by Protein ID:ENSMUSP00000044645
Original member Current member NCBI NM_019710.2 NP_062684.2 Accepted alive Link to Nucleotide Sequence:NM_019710.2Link to Protein Sequence:NP_062684.2Re-query CCDS DB by Nucleotide ID:NM_019710Re-query CCDS DB by Protein ID:NP_062684Link to BLAST:NP_062684.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062684.2 1233 Q9CU62 1233 100% 0 0

Chromosomal Locations for CCDS 30473.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 152016532 152016640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152022746 152022934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152023039 152023151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152026238 152026441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152026532 152026770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152027694 152027952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152028041 152028181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152028965 152029047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152029191 152029398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152033699 152033884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152033980 152034159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152036102 152036248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152036341 152036478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152037370 152037486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152037591 152037697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152041327 152041468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152046660 152046805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152046895 152047048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152047858 152047968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152058779 152058935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152059358 152059512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152059628 152059779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152060976 152061045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152061293 152061403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152061726 152061809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3702 nt):
ATGGGTTTCCTGAAACTGATTGAGATCGAGAACTTTAAATCGTACAAGGGTCGACAGATTATCGGACCAT
TTCAGAGGTTTACCGCCATCATTGGACCCAATGGCTCTGGTAAGTCAAATCTCATGGATGCCATCAGCTT
TGTGCTTGGTGAAAAGACCAGCAACCTGAGGGTAAAGACCCTGCGGGACCTGATACATGGAGCACCTGTG
GGCAAGCCGGCTGCCAACCGAGCCTTTGTCAGCATGGTCTACTCGGAGGAGGGTGCTGAGGACCGTACCT
TTGCCCGAGTCATTGTAGGGGGCTCTTCTGAGTACAAGATCAACAACAAAGTTGTCCAGCTACATGAATA
CAGTGAAGAGTTAGAGAAGTTGGGCATTCTCATCAAAGCTCGTAACTTCCTCGTCTTCCAGGGTGCAGTG
GAGTCTATTGCCATGAAGAACCCCAAGGAGAGGACAGCTCTGTTTGAAGAAATTAGTCGCTCTGGGGAAC
TTGCACAGGAGTATGACAAGCGAAAGAAAGAAATGGTGAAGGCTGAAGAAGACACACAGTTTAATTATCA
TCGCAAGAAAAATATTGCAGCTGAACGAAAGGAGGCCAAACAAGAAAAGGAAGAGGCGGACCGCTATCAG
CGCCTGAAGGATGAGGTAGTACGAGCACAGGTACAGTTGCAGCTCTTTAAACTCTACCACAACGAAGTGG
AGATTGAGAAGCTCAACAAGGAACTGGCCTCGAAGAACAAGGAAATTGAGAAGGACAAGAAGCGGATGGA
CAAGGTAGAGGATGAGCTGAAGGAGAAGAAGAAAGAGCTGGGAAAAATGATGCGGGAACAGCAGCAGATT
GAGAAGGAGATCAAGGAAAAGGACTCGGAATTGAATCAGAAGAGGCCTCAGTACATCAAAGCAAAAGAGA
ATACATCCCACAAAATCAAGAAGCTCGAAGCAGCCAAGAAGTCTCTTCAAAATGCTCAGAAACATTATAA
GAAACGTAAAGGTGACATGGATGAGCTGGAGAAGGAGATGCTGTCAGTGGAGAAGGCCCGACAGGAGTTT
GAAGAACGGATGGAGGAAGAGAGTCAGAGTCAGGGCAGAGACTTGACCCTGGAGGAGAACCAGGTAAAGA
AATACCACCGATTGAAAGAAGAAGCCAGCAAGAGAGCAGCTACTTTGGCTCAGGAGCTGGAGAAGTTCAA
TCGAGACCAGAAAGCTGACCAGGACCGTCTAGATCTGGAAGAGCGGAAGAAAGTAGAAACAGAGGCCAAG
ATCAAGCAAAAACTGCGGGAGATTGAAGAGAATCAGAAACGGATTGAGAAGCTAGAAGAATATATTACCA
CTAGCAAGCAGTCTCTAGAGGAGCAGAAGAAGCTAGAGGGAGAACTGACGGAAGAAGTAGAGATGGCCAA
GCGTCGTATTGATGAGATCAATAAGGAGCTGAACCAGGTGATGGAGCAATTAGGGGATGCACGAATTGAC
CGACAGGAGAGTAGCCGCCAGCAGCGAAAGGCAGAAATAATGGAAAGCATCAAGCGTCTCTACCCTGGCT
CTGTGTATGGCCGCCTCATTGACCTCTGCCAGCCTACACAAAAGAAGTATCAGATTGCTGTGACCAAGGT
TTTAGGGAAGAACATGGATGCTATTATTGTAGACTCAGAGAAGACAGGTCGGGACTGTATTCAGTATATC
AAGGAGCAACGTGGAGAGCCTGAGACCTTCTTGCCTCTTGACTACCTGGAGGTGAAACCTACTGATGAGA
AACTCCGGGAGCTGAAGGGGGCCAAGCTAGTGATTGATGTAATTCGTTATGAACCACCTCACATTAAAAA
AGCTCTGCAGTATGCTTGTGGCAATGCCCTTGTTTGTGATAATGTGGAGGATGCTCGACGCATTGCCTTT
GGAGGTCACCAACGCCACAAGACAGTGGCGTTGGATGGCACCCTGTTCCAGAAGTCAGGAGTTATCTCTG
GTGGAGCCAGTGATCTCAAGGCAAAAGCACGGCGCTGGGATGAGAAAGCAGTAGACAAACTGAAAGAAAA
AAAAGAACGTTTGACAGAGGAGCTGAAAGAGCAGATGAAGGCAAAACGGAAAGAGGCAGAACTGCGTCAA
GTGCAGTCTCAGGCCCACGGGCTTCAAATGCGGCTGAAGTACTCACAGAGTGACCTAGAACAGACTAAGA
CAAGGCATCTTGCCCTGAATCTCCAGGAAAAGTCTAAGCTGGAGAGTGAACTAGCCAACTTCGGGCCTCG
CATTAATGATATCAAGAGAATCATACAGAGCCGAGAGAGGGAAATGAAAGACTTGAAGGAGAAGATGAAC
CAGGTGGAAGATGAGGTGTTTGAAGAGTTTTGTCGGGAAATTGGTGTGCGTAACATCCGAGAATTTGAGG
AAGAAAAGGTGAAGCGGCAGAATGAAATTGCCAAGAAACGCTTGGAATTTGAGAATCAGAAGACTCGCTT
GGGCATCCAATTGGATTTTGAAAAGAATCAGTTGAAGGAGGACCAGGATAAAGTACACATGTGGGAACAG
ACGGTGAAAAAGGATGAAAATGAGATAGAAAAGCTTAAGAAGGAGGAACAAAGACACATGAAGATAATAG
ATGAAACCATGGCTCAGCTTCAAGACCTTAAGAATCAGCACCTGGCCAAAAAGTCAGAAGTAAACGACAA
GAATCATGAGATGGAAGAGATTCGCAAGAAGCTTGGGGGTGCCAACAAGGAAATGACTCATTTACAGAAG
GAAGTGACAGCCATTGAGACCAAACTTGAACAGAAGCGCAGTGACCGCCACAACCTGCTACAGGCCTGTA
AGATGCAGGACATCAAACTGCCACTGTCAAAGGGCACCATGGATGATATTAGTCAGGAAGAAGGTAGCTC
CCAGGGAGAAGAGTCAGTGAGTGGTTCCCAGAGAACATCCAGTATCTATGCTCGAGAGGCCCTCATTGAG
ATTGACTACGGTGACCTGTGTGAAGATCTGAAGGATGCACAGGCGGAGGAAGAAATCAAGCAAGAAATGA
ACACACTCCAGCAAAAGCTGAATGAGCAGCAGAGTGTGCTTCAGCGGATTGCTGCCCCTAACATGAAGGC
CATGGAAAAGCTGGAGAGTGTCCGAGACAAGTTCCAGGAGACCTCAGATGAGTTTGAAGCAGCACGAAAG
CGAGCAAAGAAGGCCAAGCAGGCATTTGAACAGATAAAGAAGGAGCGCTTCGACCGATTCAATGCTTGCT
TTGAATCTGTGGCTACCAACATTGATGAGATCTATAAGGCTCTGTCCCGTAACAGCAGTGCCCAGGCATT
CTTGGGCCCTGAGAATCCTGAAGAGCCCTATTTGGATGGCATCAACTACAACTGTGTAGCTCCTGGCAAA
CGTTTCCGGCCTATGGACAATTTGTCAGGCGGGGAGAAGACAGTTGCAGCTCTGGCCTTGCTTTTTGCCA
TCCATAGCTACAAGCCAGCCCCCTTCTTCGTCCTGGATGAGATTGACGCTGCCTTGGATAACACCAACAT
TGGCAAGGTGGCAAATTACATCAAGGAACAGTCAACTTGCAACTTCCAGGCCATTGTTATCTCTCTCAAG
GAGGAATTCTACACCAAGGCTGAGAGCCTCATTGGAGTCTATCCTGAGCAAGGGGACTGTGTGATCAGCA
AAGTCCTGACTTTCGACCTCACCAAGTACCCAGATGCCAACCCCAACCCCAATGAACAATAG

Translation (1233 aa):
MGFLKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPV
GKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELEKLGILIKARNFLVFQGAV
ESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAAERKEAKQEKEEADRYQ
RLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQI
EKEIKEKDSELNQKRPQYIKAKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEF
EERMEEESQSQGRDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEINKELNQVMEQLGDARID
RQESSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYI
KEQRGEPETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAF
GGHQRHKTVALDGTLFQKSGVISGGASDLKAKARRWDEKAVDKLKEKKERLTEELKEQMKAKRKEAELRQ
VQSQAHGLQMRLKYSQSDLEQTKTRHLALNLQEKSKLESELANFGPRINDIKRIIQSREREMKDLKEKMN
QVEDEVFEEFCREIGVRNIREFEEEKVKRQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQ
TVKKDENEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQK
EVTAIETKLEQKRSDRHNLLQACKMQDIKLPLSKGTMDDISQEEGSSQGEESVSGSQRTSSIYAREALIE
IDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFEAARK
RAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGK
RFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLK
EEFYTKAESLIGVYPEQGDCVISKVLTFDLTKYPDANPNPNEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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