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Report for CCDS36610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36610.1 Public Mus musculus 13 Or2b2b 23 108 98 CCDS HistoryNCBI Gene:258536Re-query CCDS DB by CCDS ID:36610.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079135.5 ENSMUSP00000074361.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079135.5Link to Ensembl Protein Viewer:ENSMUSP00000074361.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079135Re-query CCDS DB by Protein ID:ENSMUSP00000074361
Original member Current member EBI ENSMUST00000205788.2 ENSMUSP00000146159.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205788.2Link to Ensembl Protein Viewer:ENSMUSP00000146159.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000205788Re-query CCDS DB by Protein ID:ENSMUSP00000146159
Original member Current member EBI ENSMUST00000216083.1 ENSMUSP00000149423.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216083.1Link to Ensembl Protein Viewer:ENSMUSP00000149423.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216083Re-query CCDS DB by Protein ID:ENSMUSP00000149423
Original member Current member NCBI NM_146543.2 NP_666754.2 Accepted alive Link to Nucleotide Sequence:NM_146543.2Link to Protein Sequence:NP_666754.2Re-query CCDS DB by Nucleotide ID:NM_146543Re-query CCDS DB by Protein ID:NP_666754Link to BLAST:NP_666754.2

Chromosomal Locations for CCDS 36610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21674001 21674942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGAGTGTGGCCAATGAGAGCATCTCACGGGAGTTCATTCTCTTAGGGTTTTCAGATCGGCCATGGCTGG
AGCTGCCGCTCTTTGTGGTATTTCTAGTGTCCTATATTCTGACCATCTTTGGAAATATGATGATCATTCT
TGTGTCCCGCCTGGATTCCAAACTCCACACCCCCATGTACTTTTTCCTCACTAACCTGTCCTTGCTGGAC
CTGTGCTACACCACAAGCACGGTCCCACAGATGCTCATCAACATCTGCAGCACCCGGAAGGTGATCAGCT
ATGGTGGCTGTGTGGCCCAGCTTTTCATTTTCCTGGCTTTGGGTTGCACAGAATGCTTTCTGCTGGGCGT
CATGTCCTTTGACAGGTTTGTAGCCATCTGTCGGCCTCTCCACTACTCAGTCATCATGCACCAGAGGCGC
TGCCTCCAGTTGGCGGCTGCATGTTGGATCAGTGGCTTCAGCAACTCAGTATTACAGTCTACGTGGACCC
TTCAGATGCCACTGTGTGGACACAAGGAAGTGGACCATTTCTTTTGCGAAGTCCCTGCCCTGCTCAAGTT
GTCCTGTGTGGATACGACAGCTAATGAAGCAGAGCTGTTCTTCATCAGTGTGCTGTTTCTTTTAATACCC
GTGACCCTCATCCTCATATCATATGCTTTTATTGTCCAGGCAGTGTTGAGAATAAGATCAGCTGAAGGTC
GGCGAAAGGCATTTGGGACATGTGGCTCCCACCTCATCGTGGTGGTCCTTTTCTATGGCACTGCCATCTA
CATGTATCTGCAGCCACCATCCCCTACTTCCAAGGACCGGGGGAAAATGGTGTCTCTCTTTTATGGGATC
ATCACACCCATGCTGAACCCCCTCATCTACACACTCAGGAACAAAGAGGTAAAGGGAGCGTTCAAGAGGT
TGGTGACAAGGATCATCCTGAGTAGAAAATAA

Translation (313 aa):
MSVANESISREFILLGFSDRPWLELPLFVVFLVSYILTIFGNMMIILVSRLDSKLHTPMYFFLTNLSLLD
LCYTTSTVPQMLINICSTRKVISYGGCVAQLFIFLALGCTECFLLGVMSFDRFVAICRPLHYSVIMHQRR
CLQLAAACWISGFSNSVLQSTWTLQMPLCGHKEVDHFFCEVPALLKLSCVDTTANEAELFFISVLFLLIP
VTLILISYAFIVQAVLRIRSAEGRRKAFGTCGSHLIVVVLFYGTAIYMYLQPPSPTSKDRGKMVSLFYGI
ITPMLNPLIYTLRNKEVKGAFKRLVTRIILSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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