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Report for CCDS54373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54373.1 Public Homo sapiens 2 REEP1 24 110 108 CCDS HistoryNCBI Gene:65055Re-query CCDS DB by CCDS ID:54373.1Re-query CCDS DB by GeneID:65055See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541910.6 ENSP00000442681.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541910.6Link to Ensembl Protein Viewer:ENSP00000442681.1Re-query CCDS DB by Nucleotide ID:ENST00000541910Re-query CCDS DB by Protein ID:ENSP00000442681
Original member Current member NCBI NM_001164732.2 NP_001158204.1 Accepted alive Link to Nucleotide Sequence:NM_001164732.2Link to Protein Sequence:NP_001158204.1Re-query CCDS DB by Nucleotide ID:NM_001164732Re-query CCDS DB by Protein ID:NP_001158204Link to BLAST:NP_001158204.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158204.1 143 Q9H902-4 143 100% 0 0

Chromosomal Locations for CCDS 54373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86217039 86217110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86232625 86232802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86263965 86264041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86282170 86282242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86337479 86337510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGTGTCATGGATCATCTCCAGGCTGGTGGTGCTTATATTTGGCACCCTTTACCCTGCGTATTATTCCT
AC
AAGGCTGTGAAATCAAAGGACATTAAGGAATATGTCAAATGGATGATGTACTGGATTATATTTGCACT
T
TTCACCACAGCAGAGACATTCACAGACATCTTCCTTTGTTGGGACAGGGTGCCTTATCGGAGAGACTGC
GGA
GCTTCAGCATGCAGGACCTCACCACCATCAGGGGAGACGGCGCCCCTGCTCCCTCGGGCCCCCCACC
AC
CGGGGTCTGGGCGGGCCAGCGGCAAACACGGCCAGCCTAAGATGTCCAGGAGTGCTTCTGAGAGCGCT
A
GCAGCTCAGGCACCGCCTAGAATCCTTCGATCTCGCTTCAGGAAGAAAAGTACCTCATCCTCGGCCACC
GAA
ACCACGTGA


Translation (143 aa):
MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWDRVPYRRDC
G
ASACRTSPPSGETAPLLPRAPHHRGLGGPAANTASLRCPGVLLRALAAQ
APPRILRSRFRKKSTSSSAT
E
TT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser