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Report for CCDS9625.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9625.2 Public Homo sapiens 14 LTB4R2 24 110 108 CCDS HistoryNCBI Gene:56413Re-query CCDS DB by CCDS ID:9625.2Re-query CCDS DB by GeneID:56413See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 9625.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9625.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000533293.2 ENSP00000433290.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000533293.2Link to Ensembl Protein Viewer:ENSP00000433290.1Re-query CCDS DB by Nucleotide ID:ENST00000533293Re-query CCDS DB by Protein ID:ENSP00000433290
Original member Current member EBI ENST00000543919.1 ENSP00000445772.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543919.1Link to Ensembl Protein Viewer:ENSP00000445772.1Re-query CCDS DB by Nucleotide ID:ENST00000543919Re-query CCDS DB by Protein ID:ENSP00000445772
Original member Current member NCBI NM_001164692.3 NP_001158164.1 Accepted alive Link to Nucleotide Sequence:NM_001164692.3Link to Protein Sequence:NP_001158164.1Re-query CCDS DB by Nucleotide ID:NM_001164692Re-query CCDS DB by Protein ID:NP_001158164Link to BLAST:NP_001158164.1
Original member Current member NCBI NM_019839.5 NP_062813.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019839.5Link to Protein Sequence:NP_062813.2Re-query CCDS DB by Nucleotide ID:NM_019839Re-query CCDS DB by Protein ID:NP_062813Link to BLAST:NP_062813.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158164.1 358 Q9NPC1 358 100% 0 0
NP_062813.2 358 Q9NPC1 358 100% 0 0

Chromosomal Locations for CCDS 9625.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24310665 24311741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGTCGGTCTGCTACCGTCCCCCAGGGAACGAGACACTGCTGAGCTGGAAGACTTCGCGGGCCACAGGCA
CAGCCTTCCTGCTGCTGGCGGCGCTGCTGGGGCTGCCTGGCAACGGCTTCGTGGTGTGGAGCTTGGCGGG
CTGGCGGCCTGCACGGGGGCGACCGCTGGCGGCCACGCTTGTGCTGCACCTGGCGCTGGCCGACGGCGCG
GTGCTGCTGCTCACGCCGCTCTTTGTGGCCTTCCTGACCCGGCAGGCCTGGCCGCTGGGCCAGGCGGGCT
GCAAGGCGGTGTACTACGTGTGCGCGCTCAGCATGTACGCCAGCGTGCTGCTCACCGGCCTGCTCAGCCT
GCAGCGCTGCCTCGCAGTCACCCGCCCCTTCCTGGCGCCTCGGCTGCGCAGCCCGGCCCTGGCCCGCCGC
CTGCTGCTGGCGGTCTGGCTGGCCGCCCTGTTGCTCGCCGTCCCGGCCGCCGTCTACCGCCACCTGTGGA
GGGACCGCGTATGCCAGCTGTGCCACCCGTCGCCGGTCCACGCCGCCGCCCACCTGAGCCTGGAGACTCT
GACCGCTTTCGTGCTTCCTTTCGGGCTGATGCTCGGCTGCTACAGCGTGACGCTGGCACGGCTGCGGGGC
GCCCGCTGGGGCTCCGGGCGGCACGGGGCGCGGGTGGGCCGGCTGGTGAGCGCCATCGTGCTTGCCTTCG
GCTTGCTCTGGGCCCCCTACCACGCAGTCAACCTTCTGCAGGCGGTCGCAGCGCTGGCTCCACCGGAAGG
GGCCTTGGCGAAGCTGGGCGGAGCCGGCCAGGCGGCGCGAGCGGGAACTACGGCCTTGGCCTTCTTCAGT
TCTAGCGTCAACCCGGTGCTCTACGTCTTCACCGCTGGAGATCTGCTGCCCCGGGCAGGTCCCCGTTTCC
TCACGCGGCTCTTCGAAGGCTCTGGGGAGGCCCGAGGGGGCGGCCGCTCTAGGGAAGGGACCATGGAGCT
CCGAACTACCCCTCAGCTGAAAGTGGTGGGGCAGGGCCGCGGCAATGGAGACCCGGGGGGTGGGATGGAG
AAGGACGGTCCGGAATGGGACCTTTGA

Translation (358 aa):
MSVCYRPPGNETLLSWKTSRATGTAFLLLAALLGLPGNGFVVWSLAGWRPARGRPLAATLVLHLALADGA
VLLLTPLFVAFLTRQAWPLGQAGCKAVYYVCALSMYASVLLTGLLSLQRCLAVTRPFLAPRLRSPALARR
LLLAVWLAALLLAVPAAVYRHLWRDRVCQLCHPSPVHAAAHLSLETLTAFVLPFGLMLGCYSVTLARLRG
ARWGSGRHGARVGRLVSAIVLAFGLLWAPYHAVNLLQAVAALAPPEGALAKLGGAGQAARAGTTALAFFS
SSVNPVLYVFTAGDLLPRAGPRFLTRLFEGSGEARGGGRSREGTMELRTTPQLKVVGQGRGNGDPGGGME
KDGPEWDL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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