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Report for CCDS22874.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22874.2 Public Mus musculus 9 Or7e176 23 108 98 CCDS HistoryNCBI Gene:258553Re-query CCDS DB by CCDS ID:22874.2Re-query CCDS DB by GeneID:258553See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 22874.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22874.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086474.5 ENSMUSP00000083665.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086474.5Link to Ensembl Protein Viewer:ENSMUSP00000083665.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086474Re-query CCDS DB by Protein ID:ENSMUSP00000083665
Original member Current member NCBI NM_146560.2 NP_666771.2 Accepted alive Link to Nucleotide Sequence:NM_146560.2Link to Protein Sequence:NP_666771.2Re-query CCDS DB by Nucleotide ID:NM_146560Re-query CCDS DB by Protein ID:NP_666771Link to BLAST:NP_666771.2

Chromosomal Locations for CCDS 22874.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20237214 20237242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20259871 20260813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGACCCAGCAAAGAATAAGCTTAAATAAGTGTCCAAACAACACAGAAGCACAAAATCTACCAGTTGTCT
CACAGTTCCATCTCATGAGCCTCTCAGAGAATGTAGAACTACAGCCTTTCCTACTTGTGCTGTTTTTATC
CTTCTACATGGTCACAGTGCTTGGAAATCTGCTCATCATTCTGGCCGTGTGCTCTGACTTCCACCTCCAT
ACCCCCATGTATTTCTTTCTCTCCAACCTTTCCTGGTCTGACATTTGTTTGATCTCCACTATAGTCCCAA
GGATGATTTGGGATATTGGAACTCAAAGCAGAGTCATCTCCTATGTGAGCTGCCTAACACAGATGTCCAT
GTTTATAGTTTTTGGATGTATGGATAGTATGCTTCTGACTGTAATGGCCTATGATAGGTTTGTAGCCATC
TGTCACCCTCTGCATTACAAAATCATTATGAATCCTAACCTCTGTGCATTCTTACTTTTAGCATCTGTTT
TGGCCAGTCTTGTGGACTCTCAGGTGCACAATTTGATTGTACTGCAATTTACATATTTCAATGACATGGA
AATCTCTAACTTCTTTTGTGACCCTTCACAACTTCTTAATCATAACTGTTCTGAAATGTTCACCAAAAAC
ATAGTTATACATTTTATTGGTGTCTTTTTTGGTTTATTTTCAACCACAGGAATTATTTTCTCATACTATA
AAATTATTTCTTCCATCCTGAGAATTCCAACAAAAGATGGAAAGTATAAAGCCTTTTCCACCTGTGGGTC
TCACCTGTCAGTTGTTTGCTTATTTTATGGAACATCCATTGGAGTATACATTGGTTCAACTGCATCGAAT
TCCCCTAAAAACTGTGCAATTGCTTCACTGATGTACACAGTGGTCACACCTATGCTTAATCCCTTCATCT
ACAGCCTGAGGAACAGGGACATTAAAACTGCTCTTTGGCAGCTGCAGAGAAGAGCAATGTAA

Translation (323 aa):
MTQQRISLNKCPNNTEAQNLPVVSQFHLMSLSENVELQPFLLVLFLSFYMVTVLGNLLIILAVCSDFHLH
TPMYFFLSNLSWSDICLISTIVPRMIWDIGTQSRVISYVSCLTQMSMFIVFGCMDSMLLTVMAYDRFVAI
CHPLHYKIIMNPNLCAFLLLASVLASLVDSQVHNLIVLQFTYFNDMEISNFFCDPSQLLNHNCSEMFTKN
IVIHFIGVFFGLFSTTGIIFSYYKIISSILRIPTKDGKYKAFSTCGSHLSVVCLFYGTSIGVYIGSTASN
SPKNCAIASLMYTVVTPMLNPFIYSLRNRDIKTALWQLQRRAM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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