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Report for CCDS12447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12447.1 Public Homo sapiens 19 FXYD5 24 110 108 CCDS HistoryNCBI Gene:53827Re-query CCDS DB by CCDS ID:12447.1Re-query CCDS DB by GeneID:53827See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12447.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342879.7 ENSP00000344254.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342879.7Link to Ensembl Protein Viewer:ENSP00000344254.3Re-query CCDS DB by Nucleotide ID:ENST00000342879Re-query CCDS DB by Protein ID:ENSP00000344254
Original member Current member EBI ENST00000392219.7 ENSP00000376053.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392219.7Link to Ensembl Protein Viewer:ENSP00000376053.2Re-query CCDS DB by Nucleotide ID:ENST00000392219Re-query CCDS DB by Protein ID:ENSP00000376053
Original member Current member EBI ENST00000423817.7 ENSP00000393848.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423817.7Link to Ensembl Protein Viewer:ENSP00000393848.2Re-query CCDS DB by Nucleotide ID:ENST00000423817Re-query CCDS DB by Protein ID:ENSP00000393848
Original member Current member EBI ENST00000541435.6 ENSP00000443390.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541435.6Link to Ensembl Protein Viewer:ENSP00000443390.1Re-query CCDS DB by Nucleotide ID:ENST00000541435Re-query CCDS DB by Protein ID:ENSP00000443390
Original member Current member EBI ENST00000590686.5 ENSP00000465667.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000590686.5Link to Ensembl Protein Viewer:ENSP00000465667.1Re-query CCDS DB by Nucleotide ID:ENST00000590686Re-query CCDS DB by Protein ID:ENSP00000465667
Original member Current member NCBI NM_001164605.2 NP_001158077.1 Accepted alive Link to Nucleotide Sequence:NM_001164605.2Link to Protein Sequence:NP_001158077.1Re-query CCDS DB by Nucleotide ID:NM_001164605Re-query CCDS DB by Protein ID:NP_001158077Link to BLAST:NP_001158077.1
Original member Current member NCBI NM_014164.6 NP_054883.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014164.6Link to Protein Sequence:NP_054883.3Re-query CCDS DB by Nucleotide ID:NM_014164Re-query CCDS DB by Protein ID:NP_054883Link to BLAST:NP_054883.3
Original member Current member NCBI NM_144779.3 NP_659003.1 Accepted alive Link to Nucleotide Sequence:NM_144779.3Link to Protein Sequence:NP_659003.1Re-query CCDS DB by Nucleotide ID:NM_144779Re-query CCDS DB by Protein ID:NP_659003Link to BLAST:NP_659003.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158077.1 178 Q96DB9-1 178 100% 0 0
NP_054883.3 178 Q96DB9-1 178 100% 0 0
NP_659003.1 178 Q96DB9-1 178 100% 0 0

Chromosomal Locations for CCDS 12447.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35155551 35155611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35157421 35157501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35158344 35158400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35160709 35160801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35164156 35164245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35166142 35166171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35166251 35166325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35169566 35169615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGTCGCCCTCTGGTCGCCTGTGTCTTCTCACCATCGTTGGCCTGATTCTCCCCACCAGAGGACAGACGT
TGAAAGATACCACGTCCAGTTCTTCAGCAGACTCAACTATCATGGACATTCAGGTCCCGACACGAGCCCC
AGATGCAGTCTACACAGAACTCCAGCCCACCTCTCCAACCCCAACCTGGCCTGCTGATGAAACACCACAA
CCCCAGACCCAGACCCAGCAACTGGAAGGAACGGATGGGCCTCTAGTGACAGATCCAGAGACACACAAGA
GCACCAAAGCAGCTCATCCCACTGATGACACCACGACGCTCTCTGAGAGACCATCCCCAAGCACAGACGT
CCAGACAGACCCCCAGACCCTCAAGCCATCTGGTTTTCATGAGGATGACCCCTTCTTCTATGATGAACAC
ACCCTCCGGAAACGGGGGCTGTTGGTCGCAGCTGTGCTGTTCATCACAGGCATCATCATCCTCACCAGTG
GCAAGTGCAGGCAGCTGTCCCGGTTATGCCGGAATCGTTGCAGGTGA

Translation (178 aa):
MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPTPTWPADETPQ
PQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTDPQTLKPSGFHEDDPFFYDEH
TLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNRCR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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