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Report for CCDS23901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23901.1 Public Mus musculus 10 Ctnna3 23 108 98 CCDS HistoryNCBI Gene:216033Re-query CCDS DB by CCDS ID:23901.1Re-query CCDS DB by GeneID:216033See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075099.4 ENSMUSP00000074606.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075099.4Link to Ensembl Protein Viewer:ENSMUSP00000074606.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075099Re-query CCDS DB by Protein ID:ENSMUSP00000074606
Original member Current member EBI ENSMUST00000105440.7 ENSMUSP00000101080.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105440.7Link to Ensembl Protein Viewer:ENSMUSP00000101080.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105440Re-query CCDS DB by Protein ID:ENSMUSP00000101080
Original member Current member EBI ENSMUST00000105441.7 ENSMUSP00000101081.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105441.7Link to Ensembl Protein Viewer:ENSMUSP00000101081.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105441Re-query CCDS DB by Protein ID:ENSMUSP00000101081
Original member Current member NCBI NM_001164376.1 NP_001157848.1 Accepted alive Link to Nucleotide Sequence:NM_001164376.1Link to Protein Sequence:NP_001157848.1Re-query CCDS DB by Nucleotide ID:NM_001164376Re-query CCDS DB by Protein ID:NP_001157848Link to BLAST:NP_001157848.1
Original member Current member NCBI NM_177612.3 NP_808280.2 Accepted alive Link to Nucleotide Sequence:NM_177612.3Link to Protein Sequence:NP_808280.2Re-query CCDS DB by Nucleotide ID:NM_177612Re-query CCDS DB by Protein ID:NP_808280Link to BLAST:NP_808280.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157848.1 895 Q65CL1 895 100% 0 0
NP_808280.2 895 Q65CL1 895 100% 0 0

Chromosomal Locations for CCDS 23901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 63504037 63504135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63537521 63537713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63566804 63566970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63581944 63582063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63820222 63820485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63852622 63852825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64250698 64250778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64260813 64260965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64409191 64409283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64487462 64487618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64585960 64586160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64675765 64675916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64834578 64834670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64873161 64873342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64945919 64946024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64959770 64959904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 65002546 65002833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2688 nt):
ATGTCGGCAGAAACGCCAATAACCCTGAATATGGACACTCAGGATCTGCAGATCCAAACGTTCACTGTGG
AGAAACTGCTGGAGCCTCTGATAATCCAGGTTACTACCCTGGTGAATTGTCCGCAGAATCCTTCCAACAG
GAAGAAAGGACGTTCAAAGAGAGCCAGAGTTCTTCTAGCTTCCGTGGAGGAAGCAACTTGGAATTTGTTA
GACAAGGGGGAGATGATTGCTAAGGAAGCCACGGTTTTAAAGGAAGAGCTGGCAGCTGCACTCCAGGAAG
TTCGAAAAGAGAGCAAAGCTCTGAAGGTATCAGCTGAGAGATTTACAGACGACCCCTGTTACCTCCCGAA
AAGGGAGGCCGTGGTTCAAGCCGCCCGCGCCCTGTTGGCAGCAGTTACAAGACTCCTTGTTCTTGCCGAC
ATGATTGATGTCATGTGCCTCTTGCAGCATGTGTCATCTTTCCAAAGAACATTCGAGTCTCTCAAAAATG
TTTCCAACAAGTCCGACCTCCAGAGAACCTACCAGAAGCTCGGGAAGGAGCTGGAAAGCCTGGATTATTT
GGCCTTCAAACGCCAGCAGGACCTAAAATCTCCAAGCCAGAGGGATGAAATTGCAGGGGCCCGGGCCACC
TTGAAGGAGAACTCCCCACTCCTGCATTCTATTTGTTCAGCATGCTTGGAACATTCCGATGTTGCTTCGC
TCAAAGCCAGTAAGGACACCGTCTGTGAAGAGATCCAGAACGCTCTTGATGTAATTTCAAATGCTTCCCA
AGGCATCCAGAATGCGCCAGCGCCCCCTGAACCTCAGGCAGCAACACTGGGAAGTGCTTTTGATGAGCTG
GAGAACTTAATTGTCCTGAACCCACTCACAGTGACAGAGGAAGATGTAAGACCATCACTAGAGAAACGCC
TAGAAGCCATCATCAGTGGGGCCGCACTGTTGGCCGACTCGTCCTGCACCAGGGACCTCCACCGGGAGCG
GATTATCGCCGAGTGCAATGCCATCCGCCAGGCTCTCCAGGACCTGCTGACGGAGTACATGAGTAATACT
GGAAAAACAGAAAGGAGTAATACCCTGAATACTGCCATTGTCAACATGAGCAAGAAGACAAGAGACCTCC
GCAGACAGCTCCGCAAAGCTATCATAGATCACATATCAGATTCTTTCTTGGATACAACAGTTCCACTCCT
GGTCCTCATTGAAGCTGCGAAGAATGGCCGAGTCAAGGAAATCAAAGACTATGCTGCCATATTTCATGAG
CACACTGGCAGGCTCGTGGAGGTGGCAAATCTGGCTTGTTCCATGTCAACGAATGAAGATGGGATTAAAA
TCGTCAGAATTGCAGCCAATCACCTGGAGACCCTGTGTCCACAGATCATAAATGCTGCACTTGCTTTGGC
ATCAAGACCCAAGAGTCAAGTGGTCAAAAACACCATGGAAATGTACAAGCGCACATGGGAACACTACATC
CACGTCCTCACTGAAGCTGTAGATGACATCACCAGCATTGACGACTTTCTGGCTGTATCTGAAAGCCACA
TCCTGGAAGATGTCAACAAATGCATTATAGCCTTGAGAGATCAGGATGCTGATAATTTAGACCGAGCTGC
CGGTGCCATCAGAGGACGGGCCGCAAGAGTAGCTCACATCGTTGCGGGTGAAATGGATAGTTACGAACCC
GGCGCTTACACCGAAGGTGTGATGAGAAATGTCAACTTCCTTACAAGCACTGTGATCCCGGAGTTCGTGA
CACAAGTGAATGTGGCCCTAGATGCTTTAAGCAAGAACTCTCTGACTGCGCTTGATGATAATCAGTTTGT
GGACATCTCCAAGAAGATCTATGACACAATCCATGATATCAGGTGTTCGGTCATGATGATTCGGACACCA
GAGGAACTAGAGGATGTTTCTGACCTTGAAGATGACCATGAGGTCCGTAGCCACACCAGCATTCAGACAG
AAGGGAAAACTGATCGGGCCAAGATGACTCAACTGCCTGAGGCAGAAAAGGAAAAGATTGCTGAGCAAGT
CGCCGACTTCAAGAAGGTGAAGAGCAAGCTGGACGCTGAGATTGAGATATGGGATGACACAAGCAATGAC
ATCATTGTTCTTGCCAAGAAGATGTGCATGATCATGATGGAGATGACCGACTTCACGAGGGGGAAAGGAC
CACTAAAGCATACCACTGATGTAATCTATGCAGCTAAAATGATATCAGAGTCAGGATCAAGGATGGATGT
TCTTGCTCGGCAGATTGCTAACCAGTGTCCAGATCCACCGTGCAAACAGGACTTGCTGGCTTACCTGGAA
CAGATTAAATTCTACTCCCACCAGCTGAAAATCTGCAGTCAAGTTAAAGCAGAGATCCAAAATCTGGGGG
GAGAACTCATCGTATCAGCTTTGGACAGTGTCACCTCCCTGATCCAGGCAGCCAAGAATTTAATGAATGC
TGTAGTGCAAACAGTGAAAATGTCATACATTGCCTCCACCAAGATCATCCGCATCCAGAGTTCTGCAGGA
CCCCGGCACCCAGTAGTCATGTGGAGGATGAAGGCTCCGGCTAAGAAGCCCTTGATTAAAAGAGAGAAGC
CAGAAGAAACATGGGCAGCTGTCAGAAGAGGCTCTGCCAAGAAAAAGATCCACCCAGTTCAAGTCATGAG
TGAATTCAGAGGGAGACAAGTCTACTGA

Translation (895 aa):
MSAETPITLNMDTQDLQIQTFTVEKLLEPLIIQVTTLVNCPQNPSNRKKGRSKRARVLLASVEEATWNLL
DKGEMIAKEATVLKEELAAALQEVRKESKALKVSAERFTDDPCYLPKREAVVQAARALLAAVTRLLVLAD
MIDVMCLLQHVSSFQRTFESLKNVSNKSDLQRTYQKLGKELESLDYLAFKRQQDLKSPSQRDEIAGARAT
LKENSPLLHSICSACLEHSDVASLKASKDTVCEEIQNALDVISNASQGIQNAPAPPEPQAATLGSAFDEL
ENLIVLNPLTVTEEDVRPSLEKRLEAIISGAALLADSSCTRDLHRERIIAECNAIRQALQDLLTEYMSNT
GKTERSNTLNTAIVNMSKKTRDLRRQLRKAIIDHISDSFLDTTVPLLVLIEAAKNGRVKEIKDYAAIFHE
HTGRLVEVANLACSMSTNEDGIKIVRIAANHLETLCPQIINAALALASRPKSQVVKNTMEMYKRTWEHYI
HVLTEAVDDITSIDDFLAVSESHILEDVNKCIIALRDQDADNLDRAAGAIRGRAARVAHIVAGEMDSYEP
GAYTEGVMRNVNFLTSTVIPEFVTQVNVALDALSKNSLTALDDNQFVDISKKIYDTIHDIRCSVMMIRTP
EELEDVSDLEDDHEVRSHTSIQTEGKTDRAKMTQLPEAEKEKIAEQVADFKKVKSKLDAEIEIWDDTSND
IIVLAKKMCMIMMEMTDFTRGKGPLKHTTDVIYAAKMISESGSRMDVLARQIANQCPDPPCKQDLLAYLE
QIKFYSHQLKICSQVKAEIQNLGGELIVSALDSVTSLIQAAKNLMNAVVQTVKMSYIASTKIIRIQSSAG
PRHPVVMWRMKAPAKKPLIKREKPEETWAAVRRGSAKKKIHPVQVMSEFRGRQVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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