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Report for CCDS2551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2551.1 Public Homo sapiens 2 THAP4 24 110 108 CCDS HistoryNCBI Gene:51078Re-query CCDS DB by CCDS ID:2551.1Re-query CCDS DB by GeneID:51078See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2551.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407315.6 ENSP00000385006.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407315.6Link to Ensembl Protein Viewer:ENSP00000385006.1Re-query CCDS DB by Nucleotide ID:ENST00000407315Re-query CCDS DB by Protein ID:ENSP00000385006
Original member Current member NCBI NM_015963.6 NP_057047.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015963.6Link to Protein Sequence:NP_057047.4Re-query CCDS DB by Nucleotide ID:NM_015963Re-query CCDS DB by Protein ID:NP_057047Link to BLAST:NP_057047.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057047.4 577 Q8WY91-1 577 100% 0 0

Chromosomal Locations for CCDS 2551.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 241584606 241584725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241601896 241601999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241602970 241603079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241606314 241606473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241632917 241634079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241636941 241637017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGGTGATCTGCTGTGCGGCCGTGAACTGCTCCAACCGGCAGGGAAAGGGCGAGAAGCGCGCCGTCTCCT
TCCACAGGTTCCCCCTAAAGGACTCAAAACGTCTAATCCAATGGTTAAAAGCTGTTCAGAGGGATAACTG
GACTCCCACTAAGTATTCATTTCTCTGTAGTGAGCATTTCACCAAAGACAGCTTCTCCAAGAGGCTGGAG
GACCAGCATCGCCTGCTGAAGCCCACGGCCGTGCCATCCATCTTCCACCTGACCGAGAAGAAGAGGGGGG
CTGGAGGCCATGGCCGCACCCGGAGAAAAGATGCCAGCAAGGCCACAGGGGGTGTGAGGGGACACTCGAG
TGCCGCCACCAGCAGAGGAGCTGCAGGTTGGTCACCGTCCTCGAGTGGAAACCCGATGGCCAAGCCAGAG
TCCCGCAGGTTGAAGCAAGCTGCTCTGCAAGGTGAAGCCACACCCAGGGCGGCCCAGGAGGCCGCCAGCC
AGGAGCAGGCCCAGCAAGCTCTGGAACGGACTCCAGGAGATGGACTGGCCACCATGGTGGCAGGCAGTCA
GGGAAAAGCAGAAGCGTCTGCCACAGATGCTGGCGATGAGAGCGCCACTTCCTCCATCGAAGGGGGCGTG
ACAGATAAGAGTGGCATTTCTATGGATGACTTTACGCCCCCAGGATCTGGGGCGTGCAAATTTATCGGCT
CACTTCATTCGTACAGTTTCTCCTCTAAGCACACCCGAGAAAGGCCATCTGTCCCCCGAGAGCCCATTGA
CCGCAAGAGGCTGAAGAAAGATGTGGAACCAAGCTGCAGTGGGAGCAGCCTGGGACCCGACAAGGGCCTG
GCCCAGAGCCCTCCCAGCTCATCACTTACCGCGACACCGCAGAAGCCTTCCCAGAGCCCCTCTGCCCCTC
CTGCCGACGTCACCCCAAAGCCAGCCACGGAAGCCGTGCAGAGCGAGCACAGCGACGCCAGCCCCATGTC
CATCAACGAGGTCATCCTGTCGGCGTCAGGGGCCTGCAAGCTCATCGACTCACTGCACTCCTACTGCTTC
TCCTCCCGGCAGAACAAGAGCCAGGTGTGCTGCCTGCGGGAGCAGGTGGAGAAGAAGAACGGCGAGCTGA
AGAGCCTGCGGCAGAGGGTCAGCCGCTCCGACAGCCAGGTGCGGAAGCTACAGGAGAAGCTGGATGAGCT
GAGGAGAGTGAGCGTCCCCTATCCAAGTAGCCTGCTGTCGCCCAGCCGCGAGCCCCCCAAGATGAACCCA
GTGGTGGAGCCACTGTCCTGGATGCTGGGCACCTGGCTGTCGGACCCACCTGGAGCCGGGACCTACCCCA
CACTGCAGCCCTTCCAGTACCTGGAGGAGGTTCACATCTCCCACGTGGGCCAGCCCATGCTGAACTTCTC
GTTCAACTCCTTCCACCCGGACACGCGCAAGCCGATGCACAGAGAGTGTGGCTTCATTCGCCTCAAGCCC
GACACCAACAAGGTGGCCTTTGTCAGCGCCCAGAACACAGGCGTGGTGGAAGTGGAGGAGGGCGAGGTGA
ACGGGCAGGAGCTGTGCATCGCATCCCACTCCATCGCCAGGATCTCCTTCGCCAAGGAGCCCCACGTAGA
GCAGATCACCCGGAAGTTCAGGCTGAATTCTGAAGGCAAACTTGAGCAGACGGTCTCCATGGCAACCACG
ACACAGCCAATGACTCAGCATCTTCACGTCACCTACAAGAAGGTGACCCCGTAA

Translation (577 aa):
MVICCAAVNCSNRQGKGEKRAVSFHRFPLKDSKRLIQWLKAVQRDNWTPTKYSFLCSEHFTKDSFSKRLE
DQHRLLKPTAVPSIFHLTEKKRGAGGHGRTRRKDASKATGGVRGHSSAATSRGAAGWSPSSSGNPMAKPE
SRRLKQAALQGEATPRAAQEAASQEQAQQALERTPGDGLATMVAGSQGKAEASATDAGDESATSSIEGGV
TDKSGISMDDFTPPGSGACKFIGSLHSYSFSSKHTRERPSVPREPIDRKRLKKDVEPSCSGSSLGPDKGL
AQSPPSSSLTATPQKPSQSPSAPPADVTPKPATEAVQSEHSDASPMSINEVILSASGACKLIDSLHSYCF
SSRQNKSQVCCLREQVEKKNGELKSLRQRVSRSDSQVRKLQEKLDELRRVSVPYPSSLLSPSREPPKMNP
VVEPLSWMLGTWLSDPPGAGTYPTLQPFQYLEEVHISHVGQPMLNFSFNSFHPDTRKPMHRECGFIRLKP
DTNKVAFVSAQNTGVVEVEEGEVNGQELCIASHSIARISFAKEPHVEQITRKFRLNSEGKLEQTVSMATT
TQPMTQHLHVTYKKVTP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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