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Report for CCDS29876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29876.1 Public Mus musculus 19 Cuedc2 23 108 98 CCDS HistoryNCBI Gene:67116Re-query CCDS DB by CCDS ID:29876.1Re-query CCDS DB by GeneID:67116See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29876.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051234.8 ENSMUSP00000053469.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051234.8Link to Ensembl Protein Viewer:ENSMUSP00000053469.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000051234Re-query CCDS DB by Protein ID:ENSMUSP00000053469
Original member Current member EBI ENSMUST00000167861.7 ENSMUSP00000129589.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167861.7Link to Ensembl Protein Viewer:ENSMUSP00000129589.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167861Re-query CCDS DB by Protein ID:ENSMUSP00000129589
Original member Current member EBI ENSMUST00000236046.1 ENSMUSP00000157580.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236046.1Link to Ensembl Protein Viewer:ENSMUSP00000157580.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236046Re-query CCDS DB by Protein ID:ENSMUSP00000157580
Original member Current member EBI ENSMUST00000236061.1 ENSMUSP00000157840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236061.1Link to Ensembl Protein Viewer:ENSMUSP00000157840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236061Re-query CCDS DB by Protein ID:ENSMUSP00000157840
Original member Current member EBI ENSMUST00000235485.1 ENSMUSP00000158425.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235485.1Link to Ensembl Protein Viewer:ENSMUSP00000158425.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235485Re-query CCDS DB by Protein ID:ENSMUSP00000158425
Original member Current member NCBI NM_001164290.1 NP_001157762.1 Accepted alive Link to Nucleotide Sequence:NM_001164290.1Link to Protein Sequence:NP_001157762.1Re-query CCDS DB by Nucleotide ID:NM_001164290Re-query CCDS DB by Protein ID:NP_001157762Link to BLAST:NP_001157762.1
Original member Current member NCBI NM_001164291.1 NP_001157763.1 Accepted alive Link to Nucleotide Sequence:NM_001164291.1Link to Protein Sequence:NP_001157763.1Re-query CCDS DB by Nucleotide ID:NM_001164291Re-query CCDS DB by Protein ID:NP_001157763Link to BLAST:NP_001157763.1
Original member Current member NCBI NM_001164292.1 NP_001157764.1 Accepted alive Link to Nucleotide Sequence:NM_001164292.1Link to Protein Sequence:NP_001157764.1Re-query CCDS DB by Nucleotide ID:NM_001164292Re-query CCDS DB by Protein ID:NP_001157764Link to BLAST:NP_001157764.1
Original member Current member NCBI NM_024192.2 NP_077154.2 Accepted alive Link to Nucleotide Sequence:NM_024192.2Link to Protein Sequence:NP_077154.2Re-query CCDS DB by Nucleotide ID:NM_024192Re-query CCDS DB by Protein ID:NP_077154Link to BLAST:NP_077154.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157762.1 284 Q9CXX9 284 100% 0 0
NP_001157763.1 284 Q9CXX9 284 100% 0 0
NP_001157764.1 284 Q9CXX9 284 100% 0 0
NP_077154.2 284 Q9CXX9 284 100% 0 0

Chromosomal Locations for CCDS 29876.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46330688 46330834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46330920 46330980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46331052 46331113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46331290 46331466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46331546 46331673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46331757 46331818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46331913 46332056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46332618 46332691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGAGTTGGAGAGGATCGTCGGCTCAGCCCTCCTCACCTTCGTTCAGGCACACCTGCCAGAGGCAGACC
TCAGTGGCTTGGATGAAGTCATCTTCTCCTATGTGCTTGGGGTCCTGGAGGACCTGGGCCCCTCAGGACC
ATCAGAGGAGAACTTTGATATGGAGGCCTTCACTGAAATGATGGAGGCTTATGTGCCTGGCTTTGCCCAC
ATCCCCAGAGGTATAATAGGAGACATGATGCAGAAGCTCTCGGTGCAGCTGAGCGATGCTAGGAACAAAG
AGAACCTGCACCCACAGAGCTCCTGTGTCCAAGGTCAGGTGCCCATTTTTCCAGAGACCCCGAGGCAAGC
TGAAAAGCTCGAAGAAGAGAGCAGGCCTCCCGCTGCTCCCGGGAACACCCTAGATGAGGCAGCTGCGGCA
GAAGAACTGCCAGGAGTCGATGTGCTCCTGGAGGTCTTCCCTACCTGCTCTATGGAGCAGGCCCAGTGGG
TGCTGGCCAAAGCTCGGGGGGACTTGGAGGAAGCTGTGCACATGCTGGTAGAGGGCAAGGAAGAGGGGCC
TCCAGGCTGGGACGGCCCAAGTCAGGACTTGCCCAGGCGTCTCAGAGGCCCCCAAAAGGATGACTTGAAG
TCTTTCATCCTTCAGAAGTACATGATGGTGGACAGGGCGGAGGACCAGAAGACTCACCGACCTATGGCTC
CCAAGGAGGCCCCCAAGAAGCTGATCCGATACATCGACAACCAAGTAGTGAGCACCAAGGGAGAGCGATT
CAAAGATGTCCGGAACCCTGAGGCCGAGGAGATGAAGGCCACATACATCAACCTCAAGCCGGCCAGAAAG
TACCGCTTCCACTGA

Translation (284 aa):
MELERIVGSALLTFVQAHLPEADLSGLDEVIFSYVLGVLEDLGPSGPSEENFDMEAFTEMMEAYVPGFAH
IPRGIIGDMMQKLSVQLSDARNKENLHPQSSCVQGQVPIFPETPRQAEKLEEESRPPAAPGNTLDEAAAA
EELPGVDVLLEVFPTCSMEQAQWVLAKARGDLEEAVHMLVEGKEEGPPGWDGPSQDLPRRLRGPQKDDLK
SFILQKYMMVDRAEDQKTHRPMAPKEAPKKLIRYIDNQVVSTKGERFKDVRNPEAEEMKATYINLKPARK
YRFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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