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Report for CCDS49906.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
49906.1 |
Public |
Mus musculus |
16 |
Synj1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:104015](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:49906.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:104015](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 49906.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000170853.7 |
ENSMUSP00000128997.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000170853.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000128997.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000170853](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000128997](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001045515.1 |
NP_001038980.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001045515.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001038980.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001045515](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001038980](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001045515.2 |
NP_001038980.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001045515.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001038980.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001045515](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001038980](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001038980.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 49906.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3930 nt): ATGGCGTTCAGCAAAGGATTTCGAATCTACCACAAATTGGATCCCCCACCGTTCAGCCTCATAGTGGAAA CTAGGCATAAGGAAGAATGTCTCATGTTCGAGTCTGGGGCTGTGGCTGTGCTCTCATCTGCAGAAAAGGA GGCTATTAAAGGCACATATGCCAAAGTACTGGATGCATACGGACTTTTGGGAGTTTTACGATTAAATCTT GGTGATACCATGCTGCACTATCTGGTCCTAGTCACTGGATGCATGTCTGTGGGGAAAATCCAAGAATCTG AAGTTTTCCGAGTTACTTCCACTGAGTTTATATCATTGCGAGTTGATGCTTCAGATGAGGACCGCATTTC GGAAGTACGAAAAGTTTTGAACTCGGGAAACTTTTATTTTGCATGGTCTGCATCTGGAGTCAGCTTAGAT CTGAGTCTGAATGCACATCGAAGCATGCAAGAGCACACAACCGACAATAGGTTTTTCTGGAATCAGTCTC TGCATTTGCATCTCAAGCACTATGGTGTGAACTGCGATGACTGGTTATTACGGCTCATGTGTGGGGGAGT AGAGATTAGAACCATTTATGCTGCCCATAAACAGGCAAAAGCTTGCCTCATCTCAAGACTAAGCTGTGAA CGAGCTGGGACAAGGTTCAATGTCCGGGGAACCAACGATGATGGTCATGTTGCCAACTTTGTAGAGACAG AGCAGGTTATATACTTAGATGACTGTGTCTCTTCCTTCATACAAATCCGAGGATCTGTTCCATTGTTCTG GGAGCAACCAGGGTTGCAAGTGGGATCCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCCAATGCGCCT GCCTTTGACAGGCATTTCCGAACACTTAAGGACTTATATGGTAAACAGATAGTAGTGAATCTGCTTGGGT CTAAGGAAGGCGAGCATATGCTGAGCAAGGCTTTCCAGAGTCATTTAAAAGCCTCTGAACACGCTTCTGA TATCCACATGGTGTCTTTTGACTATCATCAAATGGTTAAAGGAGGAAAGGCAGAAAAACTACACAGTATT CTCAAACCACAAGTCCAGAAGTTTCTAGATTATGGATTTTTTTATTTCGATGGCAGTGAAGTTCAAAGGT GCCAGAGTGGTACAGTTCGAACAAACTGCTTGGATTGTCTGGATAGAACAAATAGTGTGCAGGCATTCCT TGGCTTAGAGATGCTCGCTAAGCAGCTGGAAGCTCTGGGCTTGGCTGAGAAGCCTCAGCTGGTGACCCGC TTCCAAGAAGTTTTCCGGTCCATGTGGTCTGTGAATGGCGACTCAATCAGTAAAATATATGCAGGCACCG GGGCCCTGGAAGGGAAGGCCAAGTTAAAAGATGGTGCGCGATCTGTCACCAGAACCATCCAGAATAACTT CTTCGACAGCTCCAAGCAGGAAGCCATTGATGTCCTGCTCCTGGGAAATACTCTCAACAGCGATTTAGCT GACAAAGCCCGAGCGCTTCTAACTACTGGAAGTTTGCGTGTTTCTGAACAGACATTACAGTCAGCATCTT CCAAAGTCTTAAAGAACATGTGTGAGAACTTCTACAAATACTCAAAGCCCAAGAAGATCCGAGTGTGTGT TGGCACCTGGAATGTGAACGGCGGGAAGCAGTTCCGCAGCATAGCGTTCAAGAACCAGACGCTCACAGAC TGGCTTCTGGACGCTCCCAAGTTAGCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAAGCCAACTGATA TATTTGCAATTGGCTTTGAAGAAATGGTGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAA CCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAGGGACAACAAGTATGTCCTGCTGGCCTCG GAGCAGCTGGTGGGTGTCTGCCTGTTTGTCTTTATCAGACCACAGCACGCTCCTTTTATCAGGGATGTTG CAGTTGATACTGTGAAAACTGGCATGGGAGGTGCAACTGGAAACAAGGGCGCCGTTGCAATTCGGATGCT CTTCCACACCACCAGCCTTTGCTTCGTCTGCAGCCACTTTGCTGCAGGGCAGTCCCAAGTCAAAGAGAGA AATGAAGATTTTGTAGAAATAGCACGAAAACTGAGTTTCCCCATGGGACGAATGCTCTTCTCCCATGACT ATGTATTTTGGTGTGGTGATTTCAACTATCGAATTGACCTTCCGAATGAAGAGGTTAAAGAGCTCATAAG ACAACAAAACTGGGATTCTCTGATCGCTGGGGATCAGCTCATCAACCAGAAAAATGCAGGACAGATCTTT AGAGGATTCTTAGAGGGAAAAGTAACGTTTGCTCCAACCTATAAATATGACTTGTTTTCTGAAGACTATG ACACCAGTGAGAAGTGTCGCACCCCTGCTTGGACAGACCGTGTCCTCTGGAGAAGGAGGAAGTGGCCTTT TGACAGATCAGCTGAAGATTTAGATCTCCTGAATGCTAGTTTCCAAGATGAAAGTAAAATTCTTTATACA TGGACCCCTGGCACCTTGCTGCACTATGGAAGAGCCGAGCTGAAGACTTCTGACCATAGGCCCGTCGTTG CCTTGATTGACATAGATATATTTGAAGTTGAAGCTGAAGAGAGACAAAAAATTTATAAAGAAGTTATTGC CGTCCAGGGCCCACCAGATGGCACAGTGCTGGTCTCAATCAAAAGTTCTGCACAAGAAAGTACTTTTTTT GATGATGCTTTGATTGATGAGCTTCTGCGGCAGTTTGCACACTTTGGTGAAGTTATACTCATAAGATTTG TAGAAGATAAAATGTGGGTTACATTTTTGGAGGGAAGCTCTGCCTTGAATGCTCTGAGCCTAAATGGGAA AGAGCTATTAAATCGGACTATAACAATTACTTTAAAAAGTCCAGACTGGATCAAACATTTGGAAGAAGAG ATGAGTTTAGAGAAAATCAGTGTCACGTTGCCCTCATCAGCAAGCTCCACCCTGCTTGGTGAAGACGCAG AGGTCGCAGCAGACTTTGACATGGAAGGTGACGTCGATGACTACAGCGCTGAAGTAGAGGAGCTTCTTCC TCAGCATCTGCAGCCGTCCTCAAGTTCTGGCCTGGGCACTTCTCCAAGTTCTTCACCCCGGACCAGTCCC TGCCAGTCCCCCACAGTACCAGAGTACTCCGCCCCTTCTCTTCCCATCAGACCTAGCCGAGCACCGTCAA GAACTCCAGGACCTCCAAGTTCGCAGGGCTCTCCAGTTGACACTCAGCCAGCGGCCCAGAAGGATTCTTC CCAGACTCTAGAGCCCAAGAGACCACCCCCTCCCCGCCCAGTCGCTCCTCCGGCACGTCCTGCCCCACCA CAGAGACCACCTCCACCTTCAGGGGCTAGGAGTCCTGCGCCTGCTAGAAAAGAATTTGGAGGTGTTGGAG CCCCTCCCAGTCCCGGGGTTGCTAGGAGAGAGATAGAAGCACCCAAAAGCCCTGGAACAGCACGGAAAGA TAATATAGGGCGTAATCAGCCTTCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATACGGTGCG GCTAGACCGACAATTCCAGCTCGTGCTGGAGTGATCAGCGCCCCTCAGAGCCAGGCTCGGGTATGTGCTG GAAGGCCGACTCCTGACAGCCAAAGCAAGCCCTCGGAGACATTGAAAGGTCCTGCTGTCCTTCCAGAACC ACTGAAGCCTCAGGCTGCATTTCCTCAGCAGCCTTCTCTGCCCACACCTGCTCAAAAGTTACAGGACCCG CTTGTCCCCATAGCAGCACCTACTATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAACCCCCCCACAGC CCCCACCTCGGAGCAGGTCATCTCAAAGCTTGCCTTCAGACTCCTCACCACAGCTGCAGCAGGAGCAACC AACAGGGTAA
Translation (1309 aa): MAFSKGFRIYHKLDPPPFSLIVETRHKEECLMFESGAVAVLSSAEKEAIKGTYAKVLDAYGLLGVLRLNL GDTMLHYLVLVTGCMSVGKIQESEVFRVTSTEFISLRVDASDEDRISEVRKVLNSGNFYFAWSASGVSLD LSLNAHRSMQEHTTDNRFFWNQSLHLHLKHYGVNCDDWLLRLMCGGVEIRTIYAAHKQAKACLISRLSCE RAGTRFNVRGTNDDGHVANFVETEQVIYLDDCVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFEANAP AFDRHFRTLKDLYGKQIVVNLLGSKEGEHMLSKAFQSHLKASEHASDIHMVSFDYHQMVKGGKAEKLHSI LKPQVQKFLDYGFFYFDGSEVQRCQSGTVRTNCLDCLDRTNSVQAFLGLEMLAKQLEALGLAEKPQLVTR FQEVFRSMWSVNGDSISKIYAGTGALEGKAKLKDGARSVTRTIQNNFFDSSKQEAIDVLLLGNTLNSDLA DKARALLTTGSLRVSEQTLQSASSKVLKNMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTD WLLDAPKLAGIQEFQDKRSKPTDIFAIGFEEMVELNAGNIVNASTTNQKLWAVELQKTISRDNKYVLLAS EQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKER NEDFVEIARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQKNAGQIF RGFLEGKVTFAPTYKYDLFSEDYDTSEKCRTPAWTDRVLWRRRKWPFDRSAEDLDLLNASFQDESKILYT WTPGTLLHYGRAELKTSDHRPVVALIDIDIFEVEAEERQKIYKEVIAVQGPPDGTVLVSIKSSAQESTFF DDALIDELLRQFAHFGEVILIRFVEDKMWVTFLEGSSALNALSLNGKELLNRTITITLKSPDWIKHLEEE MSLEKISVTLPSSASSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSP CQSPTVPEYSAPSLPIRPSRAPSRTPGPPSSQGSPVDTQPAAQKDSSQTLEPKRPPPPRPVAPPARPAPP QRPPPPSGARSPAPARKEFGGVGAPPSPGVARREIEAPKSPGTARKDNIGRNQPSPQAGLAGPGPAGYGA ARPTIPARAGVISAPQSQARVCAGRPTPDSQSKPSETLKGPAVLPEPLKPQAAFPQQPSLPTPAQKLQDP LVPIAAPTMPPSGPQPNLETPPQPPPRSRSSQSLPSDSSPQLQQEQPTG
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