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Report for CCDS48547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48547.1 Public Mus musculus 10 Mical1 23 108 98 CCDS HistoryNCBI Gene:171580Re-query CCDS DB by CCDS ID:48547.1Re-query CCDS DB by GeneID:171580See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099934.10 ENSMUSP00000097519.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099934.10Link to Ensembl Protein Viewer:ENSMUSP00000097519.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099934Re-query CCDS DB by Protein ID:ENSMUSP00000097519
Original member Current member NCBI NM_001164433.1 NP_001157905.1 Accepted alive Link to Nucleotide Sequence:NM_001164433.1Link to Protein Sequence:NP_001157905.1Re-query CCDS DB by Nucleotide ID:NM_001164433Re-query CCDS DB by Protein ID:NP_001157905Link to BLAST:NP_001157905.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157905.1 975 Q8VDP3-2 975 100% 0 0

Chromosomal Locations for CCDS 48547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 41478057 41478314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41478974 41479067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41479395 41479499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41479619 41479774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41480285 41480385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41481134 41481391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41481590 41481705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41481901 41482027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41482208 41482289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41482604 41482748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41483441 41483631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41483717 41483802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41484165 41484254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41484376 41484532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41484733 41484809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41484985 41485255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41485395 41485495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41485766 41485879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41486028 41486121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41486372 41486471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41486594 41486667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41486758 41486888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2928 nt):
ATGGCATCACCCGCCTCCACCAACCCAGCACATGACCACTTTGAGACCTTTGTGCAGGCACAGCTGTGCC
AGGATGTACTGAGTAGCTTTCAGGGGCTCTGTAGAGCCCTGGGAGTGGAGTCTGGTGGGGGATTGTCCCA
GTACCACAAGATCAAGGCCCAGCTCAACTACTGGAGTGCCAAGTCACTGTGGGCCAAGTTGGACAAGAGA
GCGAGCCAGCCTGTGTACCAGCAAGGCCAGGCCTGTACCAACACCAAGCTTCAGCTGCTTCTACTGAAGG
TGGCCTTACTGTTGGGGGTGGAGATTCACTGGGGCGTCAAATTCACTGGCCTCCAGCCCCCTCCCAGAAA
AGGGAGTGGCTGGCGTGCTCAGCTCCAGCCCAACCCCCCAGCCCAACTGGCCAGCTATGAGTTTGATGTC
CTCATCTCAGCTGCAGGAGGCAAATTTGTCCCTGAAGGCTTCACTATACGAGAGATGCGTGGCAAACTGG
CCATTGGCATCACAGCCAACTTTGTGAATGGGCGCACGGTGGAGGAGACACAGGTGCCGGAGATCAGTGG
TGTAGCTCGAATCTACAACCAAAAATTCTTCCAGAGCCTGCTCAAAGCCACAGGTATTGATCTGGAGAAC
ATTGTATACTACAAAGACGAGACCCACTACTTTGTGATGACAGCCAAGAAGCAGTGCCTGCTGAGGCTGG
GGGTGCTGCGCCAGGACTTGTCAGAGACTGATCAGCTGCTGGGCAAAGCTAATGTGGTACCGGAGGCTCT
GCAGCGCTTTGCCAGAGCAGCGGCTGACTTCGCCACACATGGCAAGCTTGGGAAACTGGAGTTTGCTCAG
GATGCACGCGGGCGGCCTGATGTGGCGGCCTTCGACTTCACAAGCATGATGCGGGCAGAGAGTTCCGCTC
GTGTCCAAGAAAAGCATGGTGCTCGCCTACTGCTGGGGCTGGTGGGGGACTGCCTAGTGGAGCCCTTCTG
GCCTCTGGGCACTGGAGTAGCCCGAGGCTTCTTGGCAGCCTTCGATGCAGCCTGGATGGTGAAGCGGTGG
GCAGAGGGCGCTGGGCCGCTAGAGGTGTTGGCTGAACGCGAGAGCTTGTACCAGCTTCTGTCACAAACAT
CCCCCGAGAATATGCATCGAAATGTAGCCCAGTATGGGTTGGACCCTGCCACCCGATACCCCAACCTGAA
CCTCCGGGCTGTAACCCCCAATCAGGTACAGGACCTCTATGATATGATGGACAAGGAGCATGCTCAGAGG
AAGAGTGACGAGCCGGATTCCAGGAAGACAACCACAGGGTCCGCAGGCACGGAGGAGCTTCTGCACTGGT
GCCAGGAGCAGACAGCTGGCTTTCCTGGAGTCCATGTCACTGACTTTTCTTCCTCGTGGGCTGATGGGCT
AGCTCTGTGTGCCCTGGTACACCACCTACAGCCTGGCCTGCTGGAACCCTCGGAGCTGCAGGGCATGGGA
GCTCTAGAAGCCACTACCTGGGCACTGAGGGTGGCAGAACATGAGCTAGGCATCACACCAGTGTTGTCTG
CACAGGCAGTCATGGCTGGCAGTGACCCACTGGGTCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTT
CAAGAACACGAGCCACAGCTCAGGCCTTGTCAGCCAGCCCTCTGGAACCCCCAGTGCTATACTTTTCCTT
GGCAAACTCCAGAGGAGCCTACAACGGACCCGCGCCAAGGTAGACGAGGAGACTCCGAGCACTGAGGAGC
CGCCTGTCTCCGAGCCCAGTATGTCTCCAAACACTCCAGAGCTCTCTGAACACCAGGAGGCTGGGGCAGA
GGAGCTGTGTGAACTCTGTGGGAAACATCTGTACATCCTAGAACGCTTCTGTGTGGATGGCCATTTCTTT
CACCGGAGCTGCTTCTGCTGCCATACCTGTGAGGCCACATTGTGGCCAGGTGGCTATGGGCAACATCCAG
GAGATGGACATTTCTACTGTCTCCAGCACCTACCCCAGGAGGACCAAAAGGAGGCTGACAACAATGGAAG
TCTGGAGAGCCAGGAGCTCCCAACACCAGGAGACAGCAACATGCAGCCAGACCCCTCCTCTCCTCCTGTG
ACGAGGGTCAGCCCTGTCCCAAGCCCCAGCCAGCCTGCACGTCGGCTGATCCGGCTCTCCAGTTTAGAAC
GCCTACGGCTGTCCTCCCTGAATATCATCCCTGACTCAGGAGCGGAGCCTCCTCCCAAACCCCCAAGGAG
CTGCTCAGACTTGGCCCGAGAATCCCTGAAGAGCAGCTTTGTGGGCTGGGGTGTGCCAGTCCAAGCACCA
CAAGTTCCTGAAGCCATAGAGAAAGGGGATGATGAGGAGGAGGAAGAGGAAGAAGAGGAGGAGGAGGAGG
AGCCACTGCCACCTTTGGAGCCAGAGTTGGAGCAGACTCTGCTGACCTTGGCCAAGAACCCAGGTGCCAT
GACTAAGTACCCAACGTGGCGTCGAACCCTCATGCGCCGTGCCAAAGAGGAGGAGATGAAGAGGTTTTGC
AAGGCCCAGGCCATCCAGCGAAGACTGAACGAGATTGAGGCCACTATGCGGGAGCTGGAGGCCGAAGGCA
CGAAGCTGGAGCTGGCCTTGAGGAAAGAGAGTAGCTCTCCAGAACAGCAGAAGAAACTCTGGCTGGATCA
GCTGCTACGGCTCATTCAGAAGAAGAACAGCCTAGTGACTGAAGAGGCCGAGCTCATGATCACGGTGCAG
GAGCTGGATCTGGAAGAGAAGCAGCGGCAGCTAGACCACGAGTTGCGGGGCTACATGAATCGGGAAGAAA
CTATGAAGACAGAGGCCGACCTGCAGTCTGAGAACCAGGTCCTAAGGAAGCTGTTGGAGGTGGTGAACCA
GCGGGATGCTCTGATCCAATTCCAGGAGGAACGGAGGCTCAGAGAGATGCCTGCATAG

Translation (975 aa):
MASPASTNPAHDHFETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKR
ASQPVYQQGQACTNTKLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDV
LISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEETQVPEISGVARIYNQKFFQSLLKATGIDLEN
IVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQ
DARGRPDVAAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRW
AEGAGPLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMDKEHAQR
KSDEPDSRKTTTGSAGTEELLHWCQEQTAGFPGVHVTDFSSSWADGLALCALVHHLQPGLLEPSELQGMG
ALEATTWALRVAEHELGITPVLSAQAVMAGSDPLGLIAYLSHFHSAFKNTSHSSGLVSQPSGTPSAILFL
GKLQRSLQRTRAKVDEETPSTEEPPVSEPSMSPNTPELSEHQEAGAEELCELCGKHLYILERFCVDGHFF
HRSCFCCHTCEATLWPGGYGQHPGDGHFYCLQHLPQEDQKEADNNGSLESQELPTPGDSNMQPDPSSPPV
TRVSPVPSPSQPARRLIRLSSLERLRLSSLNIIPDSGAEPPPKPPRSCSDLARESLKSSFVGWGVPVQAP
QVPEAIEKGDDEEEEEEEEEEEEEPLPPLEPELEQTLLTLAKNPGAMTKYPTWRRTLMRRAKEEEMKRFC
KAQAIQRRLNEIEATMRELEAEGTKLELALRKESSSPEQQKKLWLDQLLRLIQKKNSLVTEEAELMITVQ
ELDLEEKQRQLDHELRGYMNREETMKTEADLQSENQVLRKLLEVVNQRDALIQFQEERRLREMPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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