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Report for CCDS25310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25310.1 Public Mus musculus 11 Scrn2 23 108 98 CCDS HistoryNCBI Gene:217140Re-query CCDS DB by CCDS ID:25310.1Re-query CCDS DB by GeneID:217140See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021249.10 ENSMUSP00000021249.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021249.10Link to Ensembl Protein Viewer:ENSMUSP00000021249.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021249Re-query CCDS DB by Protein ID:ENSMUSP00000021249
Original member Current member NCBI NM_146027.2 NP_666139.1 Accepted alive Link to Nucleotide Sequence:NM_146027.2Link to Protein Sequence:NP_666139.1Re-query CCDS DB by Nucleotide ID:NM_146027Re-query CCDS DB by Protein ID:NP_666139Link to BLAST:NP_666139.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666139.1 425 Q8VCA8 425 100% 0 0

Chromosomal Locations for CCDS 25310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97030416 97030589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97030880 97031061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97032089 97032288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97032755 97032970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97033064 97033229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97033319 97033499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97033666 97033824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGCGTCGTCGAGCCCCGATGCCCCTTGTTCCTGCGACTGTTTTGTCTCTGTGCCCCCGGCCTCAGCCA
TCCCAGCTGTAATCTTTGCAAAGAACTCAGACCGGCCCCGAGATGAGGTGCAGGAGGTGGTGTTTATACC
AGCAGGCACTCACGTCCCTGGGAGCCGGCTTCAGTGTACCTATATCGAGGTGGAACAGGTGGGGAAGACA
CACGCTGTGATTCTGAGCCGCCCCTCTTGGCTGTGGGGAGCTGAGATGGGGGCCAACGAGCTTGGTGTCT
GCATTGGAAACGAAGCAGTGTGGACCAAAGAGCCTGTGGGGCAGGGGGAAGCCCTGCTGGGTATGGACCT
GCTCAGGCTGGCTTTGGAACGGAGCAGCACTGCCCAGGAGGCTGTTCACGTGATTGCAGGCTTGCTGGAC
CGCTATGGGCAGGGAGGCAGCTGCCGGGAGGATCCAGAGCCGTTCTGCTATCACAACACCTTTTTACTGG
CTGATCGGACAGAGGCGTGGGTGCTGGAGACAGCTGGGAGCCTGTGGGCTGCTCAGCGGATCCAGGGAGG
TGCCCGGAATATTTCCAACCAGCTGAGCATTGGTACAGACATCTCAGCTGAACACCCGGAGCTCCGCAGC
CATGCCAAGGCTCAGGGTTGGTGGACTGGGCAGGGCCTCTTTGACTTTGCGGAGGTCTTCTCCCTGACCC
AGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCGGGCAGGGTGTGAGATGCTGCAGCGGCATCA
AGGGAACATCACAGCAGAGGTGATGATGGGCATCCTCAGGGACAAGGAGAGCGGCATCTGCATGGACTCC
GGAGGCTTCCGCACCACAGCCAGTATGGTATCGGTCCTGCCCCAGGATCCCACAAAGCCCTGTGTCCACT
TCCTCACTGCCACCCCAGACCCATCCAGGTCGGTATTCAAGCCTTTCATCTTTGAAGTGGGGGTGTCCCA
GTCCCCCCAGGTGTTGTCCCCCACTTTTGGAGCCCAGGACCCTGTTCGGATCCTCCCACGATTCCAGACT
CGGGTGGACCGTCGGCACTCACTCTATCGTGGACACCAGGCAGCCCTGGGGCTGATGGAGGATGAGCAGG
AGCAGGCACAGCAACTCCGGAAAAAGCAGCAGAGGCTGGAGCAGGAAGGCCTAGAGGCTCTCAGAGGGCT
GCTTACGGGTGAACAGACCCCACCAGCCCAGGGCCTGGGCAGCCTCTTCCAGGCCTTTGTGGAGAGGGAA
GAGCAGGCCTATGCTTAA

Translation (425 aa):
MASSSPDAPCSCDCFVSVPPASAIPAVIFAKNSDRPRDEVQEVVFIPAGTHVPGSRLQCTYIEVEQVGKT
HAVILSRPSWLWGAEMGANELGVCIGNEAVWTKEPVGQGEALLGMDLLRLALERSSTAQEAVHVIAGLLD
RYGQGGSCREDPEPFCYHNTFLLADRTEAWVLETAGSLWAAQRIQGGARNISNQLSIGTDISAEHPELRS
HAKAQGWWTGQGLFDFAEVFSLTQQPVRMEAAKARFRAGCEMLQRHQGNITAEVMMGILRDKESGICMDS
GGFRTTASMVSVLPQDPTKPCVHFLTATPDPSRSVFKPFIFEVGVSQSPQVLSPTFGAQDPVRILPRFQT
RVDRRHSLYRGHQAALGLMEDEQEQAQQLRKKQQRLEQEGLEALRGLLTGEQTPPAQGLGSLFQAFVERE
EQAYA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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