NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49677.1 Public Mus musculus 15 Chadl 23 108 98 CCDS HistoryNCBI Gene:214685Re-query CCDS DB by CCDS ID:49677.1Re-query CCDS DB by GeneID:214685See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072910.5 ENSMUSP00000072682.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072910.5Link to Ensembl Protein Viewer:ENSMUSP00000072682.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072910Re-query CCDS DB by Protein ID:ENSMUSP00000072682
Original member Current member NCBI NM_001164320.1 NP_001157792.1 Accepted alive Link to Nucleotide Sequence:NM_001164320.1Link to Protein Sequence:NP_001157792.1Re-query CCDS DB by Nucleotide ID:NM_001164320Re-query CCDS DB by Protein ID:NP_001157792Link to BLAST:NP_001157792.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157792.1 748 E9Q7T7 748 100% 0 0

Chromosomal Locations for CCDS 49677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81692120 81692306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81692987 81693153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81693534 81695243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81695850 81696024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81697229 81697236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGGAGAGGCCCCAGAGCTCCATCTGGGTCTTTATGCTGTTGCTGTTCATGGTGTTGCTCCAGAGCCCAG
CCTGGCACGTAGCTGCCCAGCGATGCCCACAGACCTGTGTCTGCGACAACTCAAGACGGCATGTTACCTG
CCGGCACCAGAACCTCACCGAGGTGCCAAACACCATCCCTGAGCTGACCCAGAGGCTGGACCTCCAGGGC
AATATACTGAAGGTCCTCCCTGCAGCGGCCTTCCAGGACCTGCCCCACCTCACGCATCTGGACCTGCGGA
ACTGTCAGGTGGAGATGGTGGCCGAGGGTGCCTTCCGTGGCCTGGGTCGCCTGCTCCTCCTCAACCTGGC
TTCCAACCGCCTGAGCACCCTGCCCCAGGAGGCGCTGGACGGGCTGGGCTCGCTGAGGCGCCTGGAGCTG
GAGGGGAACATGTTGGAGGAGCTGCGCCCGGGGACCTTCGGCGCCCTGGGCTCGCTGACCACTCTCAACT
TGGCCCACAACGCCCTGGTCTACCTGCCCGCCATGGCCTTCCAGGGGCTGCTGCGCACCCGCTGGCTGCA
GCTGTCTCACAATGCGCTCAGCGTCCTGGCCCCCGAGGCTCTGGCCGGCCTGCCGGCGCTGCGCCGTCTC
AGCCTGCACCACAACGAGCTGCAGGCCCTGCCCGGGGCCGCCCTGTCCCAGGCCCGCAGCCTGGCGCGGC
TGGAGCTGGGTCACAACCCGCTCACCTACACGGGAGAGGAGGACGGCCTGGCGCTGCCCGGCCTGCGGGA
GCTCGCACTGGACCACGGGTCCCTGCAGGCCCTGGGGCCCCGGGCCTTCGCCCACTGCCCGCGCCTGCAC
ACCCTCGACCTCCGCGGGAACCAGCTCACCACCCTGCCCCCGCTACAGGTCCCCGGCCAGCTGCGCCGCC
TGCGGCTGCAGGGCAACCCGCTGTGGTGCGCCTGCCACGCACGGCCCCTGCTCGAGTGGCTGGTGCGCGC
TCGGGTGCGCTCGGATGGCGCGTGCCGGGGCCCGCGGCGCCTGCGAGGCGAGGCCCTGGATACGCTGCGG
CCCTCTGACCTGCGCTGCCCGGGCGACGCGGCGGCGGGGGACGGGGATGGGGACGAGGACGAGGACCGGC
CGGCCGGTCCCCGCGCTCCTCCTCTTCGCTCCCCGCACGGAGAGGCCGCGTGGGCCACGCCCTGCCCTCC
AGCCTGCGCGTGCGTCGCCGAGACCCGGCACAGCACTTGCGACGGCCGCGGCCTGCAGGCCGTGCCCCGC
GGCTTCCCCAACGACACCCAGCTCCTGGACCTGAGGCGCAACCACTTCCCCTCGGTGCCCCGCGCGGCCT
TCCCGGGCTTGCGCCACTTGGTGTCGCTGCACCTGCAGCACTGCGGCGTCGCGGAGCTGGAGCCCGGCGC
CTTGGCCGGCCTGGACCGCCTGCTCTATCTCTACCTCTCCCACAACCAGCTCTCGGGCCTGAGCGCCGCC
GCCCTCGAAGGGGCCCCCAACCTGGGCTACCTGTACCTGGAGCACAACCGCTTCCTGAGGATCCCGGGGA
CCGCTCTGCGGGCCCTACCCACCCTTGTCTCGCTACACCTCCAGGACAACGCGGTGGACCGCCTGGCGCC
CGGGGATCTGGCAGGAGCGCGGGCTTTGCGCTGCCTTTACCTGAGTGGCAATCACATCACCCAGGTTTCA
CCCGGGGCGCTCGGTCCAGCGCGGGAGCTGGAGAAGCTGCACCTCGACAGAAACCGGCTGCGAGAGGTGC
CGACTGGAGCCTTGGAGGGGCTGCCGGCGCTCAAGGAGCTGCAGCTCTCGGGGAACCCGCTCCGGGCTCT
TCCAGACGGCGCCTTTCAGCCCGTGGGGCGGTCGCTGCAGCAGCTCTTCCTGAATAGCAGTGACCTGGAG
CAGATTTCTCCCAGGGCCTTCTCAGGCCTGGGAAAAGGGCTGCGGAGCTTGTACCTGCACAAGAATCAAC
TTCAGTCCCTGCCTGCCCCGCTGGGGCTCAGCGGGCTGGAGCTGGTCGACCTCAGCGGTAATCCTTTCCA
CTGTGACTGCCAGCTGCTCCCGCTGCACAGGTGGCTCACTGGGCTGAACCTGCGGGTGGGTGCCACCTGT
GCCACCCCTCCCAGTGTCCGTGGCCAGAAGGTGAAGGTTGCAGCTCCTGTCTTTGAAGCCTGCCCAGGCT
GGACTGCCAGGAAGGCCAAGAGGACACCAACCTCCAGAGGCAGTGCCAGGAGAACTCCCAGCCTCAGCCG
ACATTGA

Translation (748 aa):
MERPQSSIWVFMLLLFMVLLQSPAWHVAAQRCPQTCVCDNSRRHVTCRHQNLTEVPNTIPELTQRLDLQG
NILKVLPAAAFQDLPHLTHLDLRNCQVEMVAEGAFRGLGRLLLLNLASNRLSTLPQEALDGLGSLRRLEL
EGNMLEELRPGTFGALGSLTTLNLAHNALVYLPAMAFQGLLRTRWLQLSHNALSVLAPEALAGLPALRRL
SLHHNELQALPGAALSQARSLARLELGHNPLTYTGEEDGLALPGLRELALDHGSLQALGPRAFAHCPRLH
TLDLRGNQLTTLPPLQVPGQLRRLRLQGNPLWCACHARPLLEWLVRARVRSDGACRGPRRLRGEALDTLR
PSDLRCPGDAAAGDGDGDEDEDRPAGPRAPPLRSPHGEAAWATPCPPACACVAETRHSTCDGRGLQAVPR
GFPNDTQLLDLRRNHFPSVPRAAFPGLRHLVSLHLQHCGVAELEPGALAGLDRLLYLYLSHNQLSGLSAA
ALEGAPNLGYLYLEHNRFLRIPGTALRALPTLVSLHLQDNAVDRLAPGDLAGARALRCLYLSGNHITQVS
PGALGPARELEKLHLDRNRLREVPTGALEGLPALKELQLSGNPLRALPDGAFQPVGRSLQQLFLNSSDLE
QISPRAFSGLGKGLRSLYLHKNQLQSLPAPLGLSGLELVDLSGNPFHCDCQLLPLHRWLTGLNLRVGATC
ATPPSVRGQKVKVAAPVFEACPGWTARKAKRTPTSRGSARRTPSLSRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH