NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27625.1 Public Mus musculus 15 Gga1 23 108 98 CCDS HistoryNCBI Gene:106039Re-query CCDS DB by CCDS ID:27625.1Re-query CCDS DB by GeneID:106039See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27625.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041587.7 ENSMUSP00000035992.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041587.7Link to Ensembl Protein Viewer:ENSMUSP00000035992.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041587Re-query CCDS DB by Protein ID:ENSMUSP00000035992
Original member Current member NCBI NM_145929.2 NP_666041.1 Accepted alive Link to Nucleotide Sequence:NM_145929.2Link to Protein Sequence:NP_666041.1Re-query CCDS DB by Nucleotide ID:NM_145929Re-query CCDS DB by Protein ID:NP_666041Link to BLAST:NP_666041.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666041.1 635 Q8R0H9 635 100% 0 0

Chromosomal Locations for CCDS 27625.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78877575 78877617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78881038 78881122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78882128 78882203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78883268 78883366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78884085 78884208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78885256 78885356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78885864 78885944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78888111 78888248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78888418 78888499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78889003 78889110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78889716 78889868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78891437 78891501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78891914 78892086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78892453 78892640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78893167 78893336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78893539 78893649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78893734 78893844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1908 nt):
ATGGAGCCCGCGATGGAGCCGGAGACTCTGGAGGCACGAATCAACAGAGCCACAAATCCCCTGAACAAGG
AGCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGCAGCTCAACGAAGACTTTGAGGGGCCTCCACTTGC
CACTCGCTTGCTGGCCCACAAGATCCAGTCCCCACAGGAATGGGAAGCCATCCAGGCCTTGACGGTTCTG
GAGACGTGCATGAAGAGCTGCGGCAAGAGGTTCCATGATGAGGTGGGCAAGTTCCGCTTCCTCAACGAGC
TCATCAAGGTTGTGTCTCCCAAGTACTTGGGCTCCCGGACATCTGAGAAGGTGAAGAGTAAGATCTTGGA
GCTGCTGTACAGCTGGACGGTTTGCCTGCCTGAGGAGGTGAAGATTGCAGAAGCCTACCAGATGCTGAAG
AAGCAGGGGATTGTGAAGTCGGACCCCAAGCTTCCAGAGGATGCCATCTTTCCCCTCCCCCCTCCCCGGC
CCAAGAATGTGATCTTTGAAGATGAGGAGAAGTCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCACACCC
TGAGGACCTCCGGGCTGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAAAAG
ATCTCCAAGCGGGTGAATGCCATCGAGGAGGTCAACAACAATGTGAAGTTGCTGACAGAGATGGTGATGA
GCCACAGCCAGGGTGCTGCATCCAGCAGCAGTGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCG
CATGCGACCCACACTCTTCCGACTGGCCAGTGACACGGAAGACAATGATGAGGCCTTAGCTGAGATCCTG
CAGGCTAATGACAATCTCACCCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAACG
GTGATGCCACAGCCAGCTCCATTCCTGGAAGCACGTCAGCCCTGCTGGACCTCTCAGGCCTGGACCTCCC
TCCCCCGGGCACCACCCAGCCAGCCACGCCCACCCGCCCTGGCAACCAGAGCAGTCCTGAGCAGCTCAGT
GCCTCGGTGTCCCTGCTTGATGACGAGCTCATGTCTCTGGGCCTAAGTGACCCGACACCACCTTCAGGCA
CCAGCTCAGATAGTGTGGGGTGGGACAACTTCCAGTCATCAGATGGCACTGAATCCTCAGTCCCTCCTCC
AGCCCAGGCCCCCAGCATGGACTGCCGACCCCCAGCCCAGGCCCCTCCACCAACGAGCAGCGGCCTGGAC
GACCTGGACCTCTTGGGGAAAACCCTTATGCAGCAGGCTCTGCCTCCGGAAGCCCAGCAAGTGCGGTGGG
AGAAGCAGCAGCCAGCCCCCCGGCTCACCCTCCGTGACCTGCAGAGTAAGAGCAGCTCGCCCAGCCCAGG
AGCCGCCAGCCTCCTCCACACCACGTCCCCAGAGCCCCCTGGGCCTCCACCTCAGGCCACACCCACTGAG
TTCTCCCTAACCAGCATCACTGTGCCCCTGGAGTCTATCAAACCCAGCAGCATCTTGCCAGTGACCGTTT
ATGACCAGCATGGCTTCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGCT
GGTGGTGGTGGTCTCTATGCTGAGCACGGCGCCCCAGCCCATCCGGAACATCGTTTTCCAGTCAGCCGTC
CCCAAGGTCATGAAGGTGAGGCTGCAGCCACCTTCCGGCACAGAGCTGCCAGCGTTCAACCCCATCGTCC
ACCCCTCAGCCATCACCCAGGTCCTGCTCCTTGCTAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAA
GCTCATCTTCACTATGGGCGACCAGACCTACAATGAGATGGGAGATGTGGATCAGTTCCCCCCACCAGAG
ACCTGGGGGAGCCTCTAG

Translation (635 aa):
MEPAMEPETLEARINRATNPLNKELNWASINSFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVL
ETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKSKILELLYSWTVCLPEEVKIAEAYQMLK
KQGIVKSDPKLPEDAIFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEK
ISKRVNAIEEVNNNVKLLTEMVMSHSQGAASSSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEIL
QANDNLTQVINLYKQLVRGEEVNGDATASSIPGSTSALLDLSGLDLPPPGTTQPATPTRPGNQSSPEQLS
ASVSLLDDELMSLGLSDPTPPSGTSSDSVGWDNFQSSDGTESSVPPPAQAPSMDCRPPAQAPPPTSSGLD
DLDLLGKTLMQQALPPEAQQVRWEKQQPAPRLTLRDLQSKSSSPSPGAASLLHTTSPEPPGPPPQATPTE
FSLTSITVPLESIKPSSILPVTVYDQHGFRVLFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAV
PKVMKVRLQPPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRLRYKLIFTMGDQTYNEMGDVDQFPPPE
TWGSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH