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Report for CCDS43473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43473.1 Public Homo sapiens 6 DEFB110 24 110 108 CCDS HistoryNCBI Gene:245913Re-query CCDS DB by CCDS ID:43473.1Re-query CCDS DB by GeneID:245913See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393660.2 ENSP00000377270.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393660.2Link to Ensembl Protein Viewer:ENSP00000377270.2Re-query CCDS DB by Nucleotide ID:ENST00000393660Re-query CCDS DB by Protein ID:ENSP00000377270
Original member Current member NCBI NM_001037728.2 NP_001032817.1 Accepted alive Link to Nucleotide Sequence:NM_001037728.2Link to Protein Sequence:NP_001032817.1Re-query CCDS DB by Nucleotide ID:NM_001037728Re-query CCDS DB by Protein ID:NP_001032817Link to BLAST:NP_001032817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032817.1 62 Q30KQ9-2 62 100% 0 0

Chromosomal Locations for CCDS 43473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 50009138 50009271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50021881 50021935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (189 nt):
ATGAAGATTCAACTTTTTTTCTTTATTCTGCACTTTTGGGTCACAATTTTACCAGCCAGAAGCAATTTTG
AACCAAAGTATAGATTTGAAAGATGCGAAAAAGTGAGAGGAATATGTAAAACGTTTTGTGATGATGTTGA
GTATGATTATGGATACTGCATTAAATGGAGAAGTCAGTGCTGCGTATAA

Translation (62 aa):
MKIQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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