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Report for CCDS50175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50175.1 Public Mus musculus 17 Tgif1 23 108 98 CCDS HistoryNCBI Gene:21815Re-query CCDS DB by CCDS ID:50175.1Re-query CCDS DB by GeneID:21815See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166395.8 ENSMUSP00000130930.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166395.8Link to Ensembl Protein Viewer:ENSMUSP00000130930.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166395Re-query CCDS DB by Protein ID:ENSMUSP00000130930
Original member Current member NCBI NM_001164075.1 NP_001157547.1 Accepted alive Link to Nucleotide Sequence:NM_001164075.1Link to Protein Sequence:NP_001157547.1Re-query CCDS DB by Nucleotide ID:NM_001164075Re-query CCDS DB by Protein ID:NP_001157547Link to BLAST:NP_001157547.1

Chromosomal Locations for CCDS 50175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 70844697 70845272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70846172 70846398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70851310 70851424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGAGATGGTGCTCTCGCCACGGGCAGGCAGGCATGACCCTGCTTCTGGGTTCCGCCAGCGCGTAGAGG
GACGGGTGATCTCGGCCCCCAGGCCCAGGGTTGTGGAGCTGGAAGGTCTTGTTGCAGCATCTGGCAGTGA
CTCTGAGGATGAAGACAGCATGGACAGTCCCCTGGACCTTTCCTCATCAGCAGCCTCTGGCAAGAGAAGG
AGGAGAGGCAATCTGCCCAAGGAGTCAGTCCAGATTCTGCGAGACTGGCTGTATGAACACAGATACAACG
CCTATCCCTCAGAGCAAGAGAAAGCACTGCTGTCCCAGCAGACACACCTGTCCACACTACAGGTCTGTAA
CTGGTTCATCAACGCCCGCCGCAGGCTCCTTCCTGACATGCTGAGAAAGGATGGCAAAGATCCAAATCAG
TTCACGATTTCCCGCCGTGGGGCCAAGATTTCAGAAGCTAGCTCTATTGAAGCTGCAATGGGTATCAAAA
ACTTCATGCCAACTCTAGAAGAGAGCCCATTTCATTCCTGCGTAGTTGGACCCAACCCAACCCTAGGGAG
ACCAGTGTCTCCCAAACCTCCCTCCCCAGGATCCATTTTGGCTCGCCCGTCAGTGATCTGCCATACCACT
GTGACTGCATTGAAGGATGGGCCTTTCTCTCTCTGTCAGCCGATTGGTGTGGGACAGAGTACAGATGTAC
CGCAAATAGCACCCAGCAACTTTACAGACACCTCTCTCGTGTACCCAGAGGACACTTGCAAATCTGGACC
CAGTCCAAACCCTCAGAGTGGTCTTTTCAACACTCCTCCCCCTACTCCACCAGACCTCAACCAGGATTTT
AGTGGATTCCAGCTTCTAGTGGATGTTGCACTCAAACGAGCGGCAGAGATGGAGCTTCAGGCCAAACTCA
CAGCTTAA

Translation (305 aa):
MEMVLSPRAGRHDPASGFRQRVEGRVISAPRPRVVELEGLVAASGSDSEDEDSMDSPLDLSSSAASGKRR
RRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQ
FTISRRGAKISEASSIEAAMGIKNFMPTLEESPFHSCVVGPNPTLGRPVSPKPPSPGSILARPSVICHTT
VTALKDGPFSLCQPIGVGQSTDVPQIAPSNFTDTSLVYPEDTCKSGPSPNPQSGLFNTPPPTPPDLNQDF
SGFQLLVDVALKRAAEMELQAKLTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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