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Report for CCDS29369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29369.1 Public Mus musculus 18 Nfatc1 23 108 98 CCDS HistoryNCBI Gene:18018Re-query CCDS DB by CCDS ID:29369.1Re-query CCDS DB by GeneID:18018See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035800.7 ENSMUSP00000046312.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035800.7Link to Ensembl Protein Viewer:ENSMUSP00000046312.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035800Re-query CCDS DB by Protein ID:ENSMUSP00000046312
Original member Current member NCBI NM_016791.4 NP_058071.2 Accepted alive Link to Nucleotide Sequence:NM_016791.4Link to Protein Sequence:NP_058071.2Re-query CCDS DB by Nucleotide ID:NM_016791Re-query CCDS DB by Protein ID:NP_058071Link to BLAST:NP_058071.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058071.2 703 O88942-2 703 99.8577% 0 1

Chromosomal Locations for CCDS 29369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80649773 80649964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80653506 80653561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80663295 80663435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80665282 80665454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80666958 80667160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80682159 80682318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80697555 80698656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80708034 80708118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGACGGGGCTGGAGCAGGACCCGGAGTTCGACTTCGATTTCCTCTTCGAGTTCGATCAGAGCGGCGGGG
GCGCCGCGGCCGCAGAACACTACAGTTATGTGTCCCCTAGTGTCACCTCGACCCTGCCCCTTCCCACAGC
ACACTCTGCCTTGCCAGCAGCATGCCACGACCTCCAGACGTCCACCCCGGGTATCTCAGCTGTTCCTTCA
GCCAATCATCCCCCCAGTTACGGAGGGGCTGTGGACAGCGGGCCTTCGGGATACTTCCTGTCCTCTGGCA
ACACCAGACCCAACGGGGCCCCGACTCTGGAGAGTCCGAGAATCGAGATCACCTCCTACCTGGGCCTACA
CCATGGCAGCGGCCAGTTTTTCCACGACGTGGAGGTGGAAGACGTACTTCCTAGCTGCAAGCGCTCACCG
TCTACAGCAACCCTGCACCTGCCCAGCCTGGAAGCCTACAGAGACCCCTCCTGCCTGAGCCCAGCCAGCA
GTCTCTCCTCCAGAAGCTGTAACTCTGAGGCCTCCTCCTACGAGTCCAACTACTCCTACCCATACGCGTC
CCCCCAGACCTCTCCGTGGCAGTCACCCTGCGTGTCTCCCAAGACCACGGACCCGGAGGAGGGTTTTCCC
CGAAGCCTGGGTGCCTGCCACCTGCTAGGATCGCCCAGGCACTCCCCATCCACCTCTCCTCGGGCAAGCA
TCACGGAGGAGAGCTGGCTCGGTGCCCGCGGCTCCCGGCCCACGTCCCCCTGCAACAAGCGCAAGTACAG
TCTCAATGGCCGGCAGCCCTCCTGCTCACCCCACCACTCACCCACACCATCCCCCCATGGCTCCCCTCGG
GTCAGTGTGACCGAAGATACCTGGCTCGGTAACACCACCCAGTATACCAGCTCTGCCATTGTGGCAGCCA
TCAACGCCCTGACCACCGATAGCACTCTGGACCTGGGTGATGGGGTCCCTATCAAGTCTCGAAAGACAGC
ACTGGAGCATGCGCCCTCTGTGGCCCTCAAAGTAGAGCCAGCTGGGGAAGACCTGGGCACCACTCCACCC
ACTTCTGACTTCCCACCCGAGGAGTACACCTTCCAGCACCTTCGGAAGGGTGCCTTTTGCGAGCAGTATC
TGTCGGTGCCACAGGCCTCGTATCAGTGGGCGAAGCCCAAGTCTCTTTCCCCGACATCATATATGAGCCC
ATCCTTGCCTGCCCTTGACTGGCAGCTCCCGTCACATTCTGGTCCATACGAGCTTCGGATCGAGGTGCAG
CCCAAGTCTCACCACAGGGCTCACTATGAGACGGAAGGCAGCCGGGGGGCTGTGAAGGCTTCAGCTGGAG
GACACCCCATTGTGCAGCTACACGGTTACTTGGAGAATGAACCTCTCACGCTACAGCTGTTCATTGGGAC
GGCTGACGACCGCCTGCTGAGGCCCCACGCCTTCTACCAGGTCCACCGGATCACGGGGAAGACTGTCTCC
ACCACCAGCCACGAGATCATCCTGTCCAACACCAAAGTCCTGGAGATCCCGTTGCTTCCAGAAAATAACA
TGCGAGCCATCATCGACTGTGCTGGGATCCTGAAGCTCAGAAACTCTGATATTGAGCTGAGGAAAGGGGA
GACAGACATCGGGAGGAAGAACACCAGGGTGAGGCTGGTCTTCCGAGTTCACATCCCACAGCCCAATGGC
CGGACGCTGTCTCTCCAGGTGGCCTCGAACCCTATCGAGTGTTCCCAGCGGTCAGCCCAGGAGCTGCCCC
TCGTGGAGAAGCAGAGCACAGACAGCTACCCAGTCATCGGCGGGAAGAAGATGGTGCTGTCTGGCCATAA
CTTTCTGCAAGACTCCAAAGTCATTTTCGTGGAGAAGGCTCCAGATGGCCACCACGTCTGGGAGATGGAA
GCAAAGACTGACCGGGACCTGTGCAAGCCAAATTCCCTGGTGGTTGAGATACCACCTTTCCGCAACCAGA
GGATAACCAGCCCCGTCCAAGTCAGTTTCTATGTCTGCAACGGGAAACGGAAGAGAAGCCAGTACCAGCG
TTTCACGTACCTTCCTGCCAATGGTAACTCTGTCTTTCTAACCTTAAGCTCTGAGAGTGAGCTGAGAGGA
GGTTTTTACTGA

Translation (703 aa):
MTGLEQDPEFDFDFLFEFDQSGGGAAAAEHYSYVSPSVTSTLPLPTAHSALPAACHDLQTSTPGISAVPS
ANHPPSYGGAVDSGPSGYFLSSGNTRPNGAPTLESPRIEITSYLGLHHGSGQFFHDVEVEDVLPSCKRSP
STATLHLPSLEAYRDPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPWQSPCVSPKTTDPEEGFP
RSLGACHLLGSPRHSPSTSPRASITEESWLGARGSRPTSPCNKRKYSLNGRQPSCSPHHSPTPSPHGSPR
VSVTEDTWLGNTTQYTSSAIVAAINALTTDSTLDLGDGVPIKSRKTALEHAPSVALKVEPAGEDLGTTPP
TSDFPPEEYTFQHLRKGAFCEQYLSVPQASYQWAKPKSLSPTSYMSPSLPALDWQLPSHSGPYELRIEVQ
PKSHHRAHYETEGSRGAVKASAGGHPIVQLHGYLENEPLTLQLFIGTADDRLLRPHAFYQVHRITGKTVS
TTSHEIILSNTKVLEIPLLPENNMRAIIDCAGILKLRNSDIELRKGETDIGRKNTRVRLVFRVHIPQPNG
RTLSLQVASNPIECSQRSAQELPLVEKQSTDSYPVIGGKKMVLSGHNFLQDSKVIFVEKAPDGHHVWEME
AKTDRDLCKPNSLVVEIPPFRNQRITSPVQVSFYVCNGKRKRSQYQRFTYLPANGNSVFLTLSSESELRG
GFY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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