NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25980.1 Public Mus musculus 12 Kcnh5 23 108 98 CCDS HistoryNCBI Gene:238271Re-query CCDS DB by CCDS ID:25980.1Re-query CCDS DB by GeneID:238271See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042299.3 ENSMUSP00000046864.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042299.3Link to Ensembl Protein Viewer:ENSMUSP00000046864.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000042299Re-query CCDS DB by Protein ID:ENSMUSP00000046864
Original member Current member NCBI NM_172805.3 NP_766393.2 Accepted alive Link to Nucleotide Sequence:NM_172805.3Link to Protein Sequence:NP_766393.2Re-query CCDS DB by Nucleotide ID:NM_172805Re-query CCDS DB by Protein ID:NP_766393Link to BLAST:NP_766393.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766393.2 988 Q920E3 988 100% 0 0

Chromosomal Locations for CCDS 25980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 74897507 74898454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 74965125 74965321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 74976471 74976723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75007600 75007799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75087405 75087831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75114191 75114583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75119921 75120036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75130898 75131026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75137644 75137750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75154158 75154281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75176456 75176528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2967 nt):
ATGCCGGGGGGCAAGAGAGGGCTGGTGGCTCCGCAGAACACATTTTTGGAGAACATCGTCAGGCGCTCCA
GTGAATCAAGTTTCTTACTGGGAAATGCCCAAATTGTGGACTGGCCTGTAGTTTATAGTAATGACGGTTT
TTGTAAACTCTCTGGATATCATCGAGCTGACGTCATGCAGAAAAGCAGCACCTGCAGTTTTATGTATGGA
GAACTGACCGACAAGAAGACCATTGAGAAAGTCAGGCAGACTTTTGACAACTACGAGTCAAACTGTTTTG
AAGTTCTTCTGTACAAAAAAAACCGTACCCCTGTTTGGTTTTACATGCAAATCGCACCAATAAGAAATGA
ACACGAGAAGGTGGTCTTGTTCCTGTGTACATTCAAGGACATTACACTGTTCAAACAGCCTATAGAGGAT
GACTCAACGAAAGGTTGGACGAAGTTTGCCCGATTGACACGGGCTTTGACAAATAGCCGAAGTGTTTTAC
AGCAGCTTACACCAATGAATAAAACAGAGACAGTCCACAAGCATTCAAGACTAGCTGAAGTGCTTCAGCT
GGGATCAGACATCCTTCCTCAGTACAAACAAGAAGCGCCAAAGACGCCACCACATATCATCTTACACTAT
TGTGCTTTTAAAACTACTTGGGATTGGGTGATTTTAATTCTTACCTTCTACACCGCCATCATGGTTCCTT
ACAATGTTTCTTTCAAAACAAAGCAGAACAATATCGCCTGGCTGGTGCTGGACAGTGTGGTGGACGTGAT
TTTTCTGGTGGACATTGTTTTAAATTTTCACACGACTTTTGTGGGGCCGGGTGGAGAGGTCATTTCTGAC
CCGAAGCTTATAAGGATGAACTATCTGAAAACTTGGTTTGTGATTGATCTGCTGTCTTGTTTACCTTATG
ACATCATCAATGCCTTTGAAAATGTGGATGAGGGAATCAGCAGTCTCTTCAGCTCTTTAAAGGTGGTGCG
CCTTTTACGCCTGGGCCGTGTTGCTAGGAAACTGGACCATTACCTGGAATATGGAGCAGCGGTCCTTGTG
CTCCTGGTATGTGTGTTTGGACTGGTGGCTCACTGGCTGGCTTGCATCTGGTACAGCATTGGAGACTATG
AGGTCATTGATGAAGTCACCAACACCATTCAAATAGACAGCTGGCTCTACCAGTTGGCCTTGAGCATTGG
GACCCCATATCGCTACAATACGAGTGCAGGGATCTGGGAAGGAGGACCCAGCAAGGACTCCCTGTATGTG
TCCTCCCTCTACTTCACCATGACGAGCCTTACAACCATAGGATTTGGAAACATAGCTCCGACCACAGACG
TGGAGAAGATGTTCTCAGTGGCCATGATGATGGTCGGCTCTCTTCTTTATGCAACTATTTTTGGAAATGT
TACCACAATTTTCCAGCAAATGTATGCCAACACCAACCGTTACCATGAGATGCTGAATAATGTTCGAGAT
TTCCTGAAATTATATCAGGTCCCAAAAGGCCTTAGTGAACGAGTGATGGATTATATTGTCTCAACATGGT
CAATGTCAAAAGGCATCGACACAGAGAAGGTCCTCTCCATCTGTCCCAAGGACATGAGAGCTGACATCTG
TGTTCATCTGAACCGGAAGGTTTTTAATGAACATCCTGCATTCCGATTGGCCAGCGATGGATGTCTGCGT
GCCTTGGCAGTGGAGTTCCAAACCATTCACTGTGCTCCTGGGGACCTGATTTACCATGCTGGAGAGAGTG
TGGATGCCCTCTGCTTTGTGGTGTCCGGGTCCTTGGAAGTTATCCAGGATGAGGAGGTGGTGGCCATTTT
AGGGAAAGGTGACGTGTTTGGAGACATCTTCTGGAAGGAAACCACCCTTGCTCATGCGTGTGCCAATGTC
CGGGCCCTGACTTACTGTGATCTGCACATCATCAAGCGAGAAGCCTTGCTCAAGGTCCTTGACTTCTATA
CAGCATTTGCAAACTCATTTTCCAGGAACCTCACTCTCACTTGCAATCTAAGGAAGCGGATCATCTTCCG
TAAAATTAGTGATGTGAAGAAGGAGGAGGAGGAGCGGCTGCGGCAGAAGAATGAGGTGACTCTGAGCATC
CCCGTGGACCACCCAGTGAGGAAGCTCTTCCAGAAGTTCAAACAGCAGAAAGAACTGAGGATCCAGGGCT
CTGCACAGAGTGATCCTGAGAGGAGCCAGCTTCAGGTAGAGAGCCGCCCTTTGCAGAACGGAGCCTCCAT
CACAGGTACCAGTGTGGTCACCGTATCACAGATTACCCCCATCCAGACGTCTCTGGCGTATGTGAAAACC
AGCGAGTCTCTTAAGCAGAACAACCGCGATGCCATGGAACTGAAGCCCAATGGTGGCGCTGAACCCAAAT
GTCTCAAGGTCAACAGCCCCATCAGGATGAAAAACGGAAATGGGAAGGGGTGGCTGAGACTCAAGAACAA
CATGGGGGCTCAGGAGGAGAAAAAGGAAGACTGGAATAATGTCACCAAAGCCGAGTCGATGGGGCTCTTG
TCGGAGGACCCCAAGGGCAGTGACTCAGAGAACAGTGTGACCAAGAACCCCTTAAGGAAAACGGATTCTT
GTGACAGTGGGATTACAAAAAGTGACCTTCGTTTGGATAAAGCCGGTGAGGCCCGAAGTCCTCTAGAACA
CAGCCCCAGCCAGGCTGATGTCAAGCATTCTTTCTACCCCATCCCCGAGCAGGCCTTACAAACCACACTG
CAGGAAGTCAAACATGAACTCAAGGAGGATATCCAGCTGCTAAGCTGCAGAATGACTGCCCTGGAAAAGC
AGGTGGCAGAGATTTTAAAACTACTCTCAGAGAAAAGCGTACCCCAGACATCTTCTCCAAAACCCCAAAT
TCCACTCCAAGTACCTCCCCAAATACCATGTCAGGATATTTTTAGTGTCTCAAGGCCTGAGTCACCCGAA
TCTGACAAAGACGAAATCAACTTTTAA

Translation (988 aa):
MPGGKRGLVAPQNTFLENIVRRSSESSFLLGNAQIVDWPVVYSNDGFCKLSGYHRADVMQKSSTCSFMYG
ELTDKKTIEKVRQTFDNYESNCFEVLLYKKNRTPVWFYMQIAPIRNEHEKVVLFLCTFKDITLFKQPIED
DSTKGWTKFARLTRALTNSRSVLQQLTPMNKTETVHKHSRLAEVLQLGSDILPQYKQEAPKTPPHIILHY
CAFKTTWDWVILILTFYTAIMVPYNVSFKTKQNNIAWLVLDSVVDVIFLVDIVLNFHTTFVGPGGEVISD
PKLIRMNYLKTWFVIDLLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLV
LLVCVFGLVAHWLACIWYSIGDYEVIDEVTNTIQIDSWLYQLALSIGTPYRYNTSAGIWEGGPSKDSLYV
SSLYFTMTSLTTIGFGNIAPTTDVEKMFSVAMMMVGSLLYATIFGNVTTIFQQMYANTNRYHEMLNNVRD
FLKLYQVPKGLSERVMDYIVSTWSMSKGIDTEKVLSICPKDMRADICVHLNRKVFNEHPAFRLASDGCLR
ALAVEFQTIHCAPGDLIYHAGESVDALCFVVSGSLEVIQDEEVVAILGKGDVFGDIFWKETTLAHACANV
RALTYCDLHIIKREALLKVLDFYTAFANSFSRNLTLTCNLRKRIIFRKISDVKKEEEERLRQKNEVTLSI
PVDHPVRKLFQKFKQQKELRIQGSAQSDPERSQLQVESRPLQNGASITGTSVVTVSQITPIQTSLAYVKT
SESLKQNNRDAMELKPNGGAEPKCLKVNSPIRMKNGNGKGWLRLKNNMGAQEEKKEDWNNVTKAESMGLL
SEDPKGSDSENSVTKNPLRKTDSCDSGITKSDLRLDKAGEARSPLEHSPSQADVKHSFYPIPEQALQTTL
QEVKHELKEDIQLLSCRMTALEKQVAEILKLLSEKSVPQTSSPKPQIPLQVPPQIPCQDIFSVSRPESPE
SDKDEINF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH