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Report for CCDS13575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13575.1 Public Homo sapiens 21 GABPA 24 110 108 CCDS HistoryNCBI Gene:2551Re-query CCDS DB by CCDS ID:13575.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354828.7 ENSP00000346886.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354828.7Link to Ensembl Protein Viewer:ENSP00000346886.3Re-query CCDS DB by Nucleotide ID:ENST00000354828Re-query CCDS DB by Protein ID:ENSP00000346886
Original member Current member EBI ENST00000400075.4 ENSP00000382948.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400075.4Link to Ensembl Protein Viewer:ENSP00000382948.3Re-query CCDS DB by Nucleotide ID:ENST00000400075Re-query CCDS DB by Protein ID:ENSP00000382948
Original member Current member NCBI NM_001197297.2 NP_001184226.1 Accepted alive Link to Nucleotide Sequence:NM_001197297.2Link to Protein Sequence:NP_001184226.1Re-query CCDS DB by Nucleotide ID:NM_001197297Re-query CCDS DB by Protein ID:NP_001184226Link to BLAST:NP_001184226.1
Original member Current member NCBI NM_002040.4 NP_002031.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002040.4Link to Protein Sequence:NP_002031.2Re-query CCDS DB by Nucleotide ID:NM_002040Re-query CCDS DB by Protein ID:NP_002031Link to BLAST:NP_002031.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001184226.1 454 Q06546 454 100% 0 0
NP_002031.2 454 Q06546 454 100% 0 0

Chromosomal Locations for CCDS 13575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 25741599 25741675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25745210 25745354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25749036 25749120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25751989 25752234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25758010 25758204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25762312 25762365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25764210 25764350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25764595 25764787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25769004 25769232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGACTAAAAGAGAAGCAGAGGAGCTGATAGAAATTGAGATTGATGGAACAGAGAAAGCAGAGTGCACAG
AAGAAAGCATTGTAGAACAAACCTACGCGCCAGCTGAATGTGTAAGCCAGGCCATAGACATCAATGAACC
AATAGGCAATTTAAAGAAACTGCTAGAACCAAGACTACAGTGTTCTTTGGATGCTCATGAAATTTGTCTG
CAAGATATCCAGCTGGATCCAGAACGAAGTTTATTTGACCAAGGAGTAAAAACAGATGGAACTGTACAGC
TTAGTGTACAGGTAATTTCTTACCAAGGAATTGAACCAAAGTTAAACATCCTTGAAATTGTTAAACCTGC
GGACACTGTTGAGGTTGTTATTGATCCAGATGCCCACCATGCTGAATCAGAAGCACATCTTGTTGAAGAA
GCTCAAGTGATAACTCTTGATGGCACAAAACACATCACAACCATTTCAGATGAAACTTCAGAACAAGTGA
CAAGATGGGCTGCTGCACTGGAAGGCTATAGGAAAGAACAAGAACGCCTTGGGATACCCTATGATCCCAT
ACAGTGGTCCACAGACCAAGTCCTGCATTGGGTGGTTTGGGTAATGAAGGAATTCAGCATGACCGATATA
GACCTCACCACACTCAACATTTCGGGGAGAGAATTATGTAGTCTCAACCAAGAAGATTTTTTTCAGCGGG
TTCCTCGGGGAGAAATTCTCTGGAGTCATCTGGAACTTCTCCGAAAATATGTATTGGCAAGTCAAGAACA
ACAGATGAATGAAATAGTTACAATTGATCAACCTGTGCAAATTATTCCAGCATCAGTGCAATCTGCTACA
CCTACTACCATTAAAGTTATAAATAGTAGTGCGAAAGCAGCCAAAGTACAAAGAGCGCCGAGGATTTCAG
GAGAAGATAGAAGCTCACCTGGGAACAGAACAGGAAACAATGGCCAAATCCAACTATGGCAGTTTTTGCT
AGAACTTCTTACTGATAAGGACGCTCGAGACTGCATTTCTTGGGTTGGTGATGAAGGTGAATTTAAGCTA
AATCAGCCTGAACTGGTTGCACAGAAATGGGGACAGCGTAAAAATAAGCCTACGATGAACTATGAGAAAC
TCAGTCGTGCATTAAGATATTATTACGATGGGGACATGATTTGTAAAGTTCAAGGCAAGAGATTTGTGTA
CAAGTTTGTCTGTGACTTGAAGACTCTTATTGGATACAGTGCAGCGGAGTTGAACCGTTTGGTCACAGAA
TGTGAACAGAAGAAACTTGCAAAGATGCAGCTCCATGGAATTGCCCAGCCAGTCACAGCAGTAGCTCTGG
CTACTGCTTCTCTGCAAACGGAAAAGGATAATTGA

Translation (454 aa):
MTKREAEELIEIEIDGTEKAECTEESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICL
QDIQLDPERSLFDQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHAESEAHLVEE
AQVITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDI
DLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYVLASQEQQMNEIVTIDQPVQIIPASVQSAT
PTTIKVINSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKL
NQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTE
CEQKKLAKMQLHGIAQPVTAVALATASLQTEKDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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