NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22716.1 Public Mus musculus 8 6430548M08Rik 23 108 98 CCDS HistoryNCBI Gene:234797Re-query CCDS DB by CCDS ID:22716.1Re-query CCDS DB by GeneID:234797See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22716.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034281.12 ENSMUSP00000034281.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034281.12Link to Ensembl Protein Viewer:ENSMUSP00000034281.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034281Re-query CCDS DB by Protein ID:ENSMUSP00000034281
Original member Current member EBI ENSMUST00000108950.1 ENSMUSP00000104578.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108950.1Link to Ensembl Protein Viewer:ENSMUSP00000104578.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108950Re-query CCDS DB by Protein ID:ENSMUSP00000104578
Original member Current member NCBI NM_001163760.1 NP_001157232.1 Accepted alive Link to Nucleotide Sequence:NM_001163760.1Link to Protein Sequence:NP_001157232.1Re-query CCDS DB by Nucleotide ID:NM_001163760Re-query CCDS DB by Protein ID:NP_001157232Link to BLAST:NP_001157232.1
Original member Current member NCBI NM_172286.4 NP_758490.3 Accepted alive Link to Nucleotide Sequence:NM_172286.4Link to Protein Sequence:NP_758490.3Re-query CCDS DB by Nucleotide ID:NM_172286Re-query CCDS DB by Protein ID:NP_758490Link to BLAST:NP_758490.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157232.1 407 Q8R0A7 407 100% 0 0
NP_758490.3 407 Q8R0A7 407 100% 0 0

Chromosomal Locations for CCDS 22716.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 120145335 120145663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120149292 120149391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120150084 120150157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120151311 120151381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120152439 120152634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120153431 120153471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120153922 120154000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120156297 120156374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120157468 120157497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120159959 120160039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120160318 120160412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120161215 120161264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGAGGCCCCAGAAGTCCCTGTGGGCTCCCTGATTGACTTTGAGACTGAACCACCTACCTCCCCTCCTT
TGGAAGCAGCACCGTCAACGCTCCAGGACCCAGATGGCTCCCTGGGTGATGGTGCATCTGAGAGTGAGAC
CACCGAGTCCGCAGACAGTGAGAACGACATGGGCGAGTCACCTTCACACCCATCCTGGGACCAGGACCGA
CGCTCTTCCTCCAATGAGTCCTTCTCCTCCAATCAGAGTGCTGATTCCGCCCCAGATGAGGAGACCCTGG
CACTTCGAGAGTTTATGCGCAGCTACGTAGAGAAGATCTTCTCTGGAGGGGAGGACTTGGACCAGGAAGA
GAAAGCCAAGTTTGGGGAGTACTGCAGCGGAGAAGACGGGAAAGGCCGGGAATGGTTCGCACGCTTTGTG
AGCGCACAGCGCTGCAAGTCCAAGTGTGTGTCGGAGCCAACCTTCTACCGCCTGGTGCAGTCCTTCGCGG
TAGTGCTGTTTGAATGCCACCAGATGGACGACTTCGGGCCTGCCAAGAACCTCATGACCATGTGCTTCAC
TTACTACCATCTGGGCAAGCCCCAGCTGCCCCCGACAGAGCCCAGGGAGAAGCCAGCAGGCAGTATTGAC
TCCTACCTGAAGTCAGCCAACAGCTGGCTGGCAGAGAAGAAGGACATTGCCGAGCGGCTGCTGAAGAACA
CAGAGAACATGAAAGGCTTTTTCGGGGGGCTGGAGACCAAGCTGAAAGGACCGCTGGTCAGGAAAAATGA
GGAAGATGAGAACAAACCTAAGGACAGACAGACGAAGACTGTGACCATGATCAGCCCTGAGGATGAGCAG
AAGGGGGAGAAGGTTTACCTGTACACGCACCTGAGGCAGCAGCCCATCTGGCACACGCTGAGGTTCTGGA
ATGCTGCCTTTTTTGATGCTGTCCATTGTGAGAGGCGGAAGCGATCCCCCACCACCAGAGGGGATGCTGG
AGAGCAGGAGGAGAAGAGGGAGAAATGGTGCCACATGACCCAGGAAGAACGGGATGACAGCCTGCGCTTC
AACGAGAACATCACCTTCGGGCAGCTGGGCACGTTCACCCACAACATGCTGGCCTTTGGCTTGAACAAGA
AGCTATGCAGCGACTTCCTGAAGAAGCAGGCTGTGATTGGCAATCTAGATGAAGAGCAATACAAGCTGCT
AAGTGACCACATCGAGCAAATGGCCACAGAGTAG

Translation (407 aa):
MEAPEVPVGSLIDFETEPPTSPPLEAAPSTLQDPDGSLGDGASESETTESADSENDMGESPSHPSWDQDR
RSSSNESFSSNQSADSAPDEETLALREFMRSYVEKIFSGGEDLDQEEKAKFGEYCSGEDGKGREWFARFV
SAQRCKSKCVSEPTFYRLVQSFAVVLFECHQMDDFGPAKNLMTMCFTYYHLGKPQLPPTEPREKPAGSID
SYLKSANSWLAEKKDIAERLLKNTENMKGFFGGLETKLKGPLVRKNEEDENKPKDRQTKTVTMISPEDEQ
KGEKVYLYTHLRQQPIWHTLRFWNAAFFDAVHCERRKRSPTTRGDAGEQEEKREKWCHMTQEERDDSLRF
NENITFGQLGTFTHNMLAFGLNKKLCSDFLKKQAVIGNLDEEQYKLLSDHIEQMATE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH