NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29869.1 Public Mus musculus 19 Hps6 23 108 98 CCDS HistoryNCBI Gene:20170Re-query CCDS DB by CCDS ID:29869.1Re-query CCDS DB by GeneID:20170See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29869.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099393.3 ENSMUSP00000096991.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099393.3Link to Ensembl Protein Viewer:ENSMUSP00000096991.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099393Re-query CCDS DB by Protein ID:ENSMUSP00000096991
Original member Current member NCBI NM_176785.3 NP_789742.2 Accepted alive Link to Nucleotide Sequence:NM_176785.3Link to Protein Sequence:NP_789742.2Re-query CCDS DB by Nucleotide ID:NM_176785Re-query CCDS DB by Protein ID:NP_789742Link to BLAST:NP_789742.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789742.2 805 Q8BLY7 805 100% 0 0

Chromosomal Locations for CCDS 29869.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46003626 46006043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGAAGCGTGCAGGAACTCTGCGCCTGCTTTCGGATCTGAGCAACTTCACCGGCGCGGCCCGGCTCCGCG
AGTTGTTGGCGGGGGACCCAGCTGTCCTAGTCCGCTGCAGCCCTGACGGCCGCCACTTGCTGCTATTAAG
ACCCCCCGGATCGCCCGCCCCACAGCTTCTAGTGGCTGTGCGTGGGCCCGGCCTGCCGCTGGAGCGTGCC
TGGCCGGAGGGCGACCCCTCGCCGCTGGACGTCTTTTTCGTGCCGTGGCTGGCGCGACCCGCGCTGATCT
TGGTATGGGAGAGTGGCCTAGCAGAGGTTTGGGGCGTGGGGATGGAGCCTGGATGGAAGCTACTTCAGAG
CACTGAGCTGTGTCCGGATGGTGGAGCCCGCGTGATGGCCGTGGCCGCAACCCGAGGCCGCCTAGTTTGG
TGCGAGGAGCGTCAGCCGGGTGTTAAGGACCAACCAGAGCAGCTTTCAACGGCCTTCAGCCACCGTGTGT
GCTTCAAGACCCTGGAAACCAGCGGGGAGGCTGGCACCAAACTAGGCTGCACCCACATCCTGCTACACCA
TTGCCCCCTTTTTGGACTGATAGCCTCCCGCAAGGACCTCTTCCTGGTGCCTACTACCAACACTTGGTCT
GGTGTGGCCCACCTTCTGCTCATCTGGAGCCCAAGCAAGGGGAAGGTAATAGTTGCTGCTCCATCTCTTG
GTCTTTCACACAGTAAAAGCCTGAATCCCAAACAAGGGGACACTTGGGACTTCCGGACCCTGCTGCGAGG
CCTTCCTGGATTCCTGTCCCCCAGGGAGCCACTGGCTGTACACACTTGGGCCCCATCTTCGCAGGGCTTG
TTGTTGCTTGACTTGAAAGGGAAGGTGAGCCTAGTGCAGTGCCATGGTGGTACTCGAACCGTGGGAATCC
TGCAGGAGGCCCCTGTAAGCCTAAAAGGGTCTGCAGCCCTGGGGACATTTCACGGCACTTTAGCCTGTGT
CCTGGGCTCCACCTTGGAACTACTGGACATGAGCAGTGGGCGGCTGTTGGAAAAAAAGGTTCTCAGTACA
GACAGAGTACATTTGCTGGAGCCTCCAGCCCCGGGCATGAAGAACGAGGAAGAGCTGGAGACCCGAGGAG
CCCTACGATTGCTTTCAGCCTTGGGTCTCTTTTGTGTGTGTTGGGAAACTCCCCAAGGCCTTGAGCTGCC
TTCAGACAAGGACCTGGTGTTTGAGGAGGCCTGTGGGTACTACCAGCGTCGGAGCCTTCGAGGTACCCAG
CTTACCCCAGAAGAACTGAGACACAACAGCATGTTTCGGGCACCTCAGGCCCTGGCCTCCATCCTCCAGG
GCCACCTGCCCCCGTCTACACTCCTGACAACCCTGAGGGCTGAGCTCCGGGATTATCGTAGTATAGAACA
GCTCAAGGCCCAGCTGGTGGCTGGGGACGATGAGGAGGCTGGCTGGACTGAGTTAGCGGAGCACGAGGTG
GCCCGCCTGCTGAGAACCCAGTTGACAGGAGACCAGCTGGCCCAATTCAACACCATTTTCCAAGCCCTTC
CTACAGCAGCTTGGGGTGCCACCCTCCAGGCACTGCAGCTCCAGCCAGATAGGAGTGGCAGGCTGAGGTC
CCAAGCACCCCCGGATGTATGGAAGAAGGTCCTAAGGGCTCCAACAGCTGGAAAGGAACATCCCAATGGA
ATACTGCCGCCCTTTGAACTCCTGTGTCAGTGCCTGGGCCAGCTCGAGCCTCAGTGGCTCCCCCCATTTG
TGAAACTGGCACAGCAGCAGGGTGGCCCCGGCTGGGGGGCTGAAGGCCCCAGTCTGCCCCTTTACCGCCG
AGCCCTGGCAGTGCTAGGTGAGGAAGGGAAGAGGCCTGAGGCTCTGGAACTCGAGTTGCTTTTGGGCAGT
GGGCGACCCAAAGCCGTGCTACAAGCTGTAAGGCAGCTGATAAAGAAAGAAGAGTGGGAACGGGCTCTGG
AAGCCGGGCTGGCCCTGGATGCCTCCAGCCCCCTGCTTCGAAGTGAGATCTTTAAGCTGCTGCTGGCAGA
GTTTGCCCAGCACCGCCGCCTGGATGCACACCTCCCTCTCCTCTGTCGCCTGTGCCCACCGGAAGTGGCT
CCACATGAGCTCCTACTTCTGCTGAGGACACATCTCCCAGATGATGAGGGAACCACCCCTTTCCCTGAGC
CTGGGGCAGAGCCCCCTCTCACAGTGGGCTTGGTCAGAGCCCTGCTAGAACAGACTGGGGCTCAAGGAAG
GCCGTCTGGCCCAGTTCAAAGCACCTATGAGGACATCTTATGGGACCCAGGCACTCCACCCCCTACACCA
CCTCGTGGACCCACTGCTTCTCTCCCGGCATCAGACCATCCAGGACAAGAAGCCTGGGTACCACCTGGAC
AAGGGCTCGGTGCAGCTGATGTGGGAGTTCATTTGTAG

Translation (805 aa):
MKRAGTLRLLSDLSNFTGAARLRELLAGDPAVLVRCSPDGRHLLLLRPPGSPAPQLLVAVRGPGLPLERA
WPEGDPSPLDVFFVPWLARPALILVWESGLAEVWGVGMEPGWKLLQSTELCPDGGARVMAVAATRGRLVW
CEERQPGVKDQPEQLSTAFSHRVCFKTLETSGEAGTKLGCTHILLHHCPLFGLIASRKDLFLVPTTNTWS
GVAHLLLIWSPSKGKVIVAAPSLGLSHSKSLNPKQGDTWDFRTLLRGLPGFLSPREPLAVHTWAPSSQGL
LLLDLKGKVSLVQCHGGTRTVGILQEAPVSLKGSAALGTFHGTLACVLGSTLELLDMSSGRLLEKKVLST
DRVHLLEPPAPGMKNEEELETRGALRLLSALGLFCVCWETPQGLELPSDKDLVFEEACGYYQRRSLRGTQ
LTPEELRHNSMFRAPQALASILQGHLPPSTLLTTLRAELRDYRSIEQLKAQLVAGDDEEAGWTELAEHEV
ARLLRTQLTGDQLAQFNTIFQALPTAAWGATLQALQLQPDRSGRLRSQAPPDVWKKVLRAPTAGKEHPNG
ILPPFELLCQCLGQLEPQWLPPFVKLAQQQGGPGWGAEGPSLPLYRRALAVLGEEGKRPEALELELLLGS
GRPKAVLQAVRQLIKKEEWERALEAGLALDASSPLLRSEIFKLLLAEFAQHRRLDAHLPLLCRLCPPEVA
PHELLLLLRTHLPDDEGTTPFPEPGAEPPLTVGLVRALLEQTGAQGRPSGPVQSTYEDILWDPGTPPPTP
PRGPTASLPASDHPGQEAWVPPGQGLGAADVGVHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH