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Report for CCDS39963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39963.1 Public Mus musculus 7 Ush1c 23 108 98 CCDS HistoryNCBI Gene:72088Re-query CCDS DB by CCDS ID:39963.1Re-query CCDS DB by GeneID:72088See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078680.12 ENSMUSP00000077747.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078680.12Link to Ensembl Protein Viewer:ENSMUSP00000077747.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078680Re-query CCDS DB by Protein ID:ENSMUSP00000077747
Original member Current member NCBI NM_023649.2 NP_076138.2 Accepted alive Link to Nucleotide Sequence:NM_023649.2Link to Protein Sequence:NP_076138.2Re-query CCDS DB by Nucleotide ID:NM_023649Re-query CCDS DB by Protein ID:NP_076138Link to BLAST:NP_076138.2

Chromosomal Locations for CCDS 39963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46195722 46195734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46197196 46197251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46198353 46198462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46200974 46201073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46201369 46201422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46201633 46201674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46216018 46216079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46219299 46219423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46220449 46220514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46221393 46221535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46221641 46221697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46221849 46221908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46222818 46222902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46224838 46224932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46225184 46225241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46225410 46225434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46225543 46225651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46229203 46229341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46229454 46229597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46230064 46230131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46238429 46238464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGACCGGAAGGTGGCCCGAGAATTCCGACACAAGGTGGATTTTCTCATTGAAAATGACGCAGAGAAGG
ACTATCTTTATGATGTGCTGCGGATGTATCACCAGACCATGGATGTGGCTGTGCTCGTGGGAGACCTGAA
GCTGGTCATCAATGAACCCAACCGCCTGCCGCTGTTTGATGCCATTCGACCCCTGATCCCACTGAAGCAC
CAGGTGGAGTATGACCAGCTGACACCCCGACGCTCCAGGAAACTGAAGGAGGTACGCTTGGACCGTCTGC
ACCCAGAAGGTCTCGGCCTCAGCGTGCGTGGAGGCCTGGAATTTGGCTGTGGACTCTTTATCTCCCACCT
CATCAAAGGTGGCCAGGCAGACAGCGTTGGGCTTCAGGTAGGGGATGAAATTGTCCGGATCAACGGCTAT
TCCATCTCTTCCTGTACCCATGAGGAAGTCATCAACCTGATCCGCACCAAGAAGACCGTGTCCATCAAAG
TGAGACACATCGGACTGATCCCTGTGAAGAGCTCTCCTGAGGAGTCCCTCAAATGGCAGTATGTGGATCA
GTTCGTGTCGGAATCTGGGGGTGTGCGAGGTGGCTTGGGCTCACCTGGCAATCGGACAACCAAGGAGAAG
AAGGTGTTTATCAGTCTAGTGGGCTCTCGGGGCCTGGGCTGCAGCATCTCCAGTGGCCCCATCCAGAAGC
CTGGCATCTTCGTCAGCCACGTGAAGCCTGGCTCCCTGTCTGCAGAGGTGGGGTTAGAGACAGGAGACCA
GATTGTGGAAGTCAACGGCATAGACTTCACCAACCTGGACCACAAGGAGGCTGTGAATGTCCTGAAGAGC
AGCCGCAGCCTGACCATCTCCATCGTTGCTGGAGCCGGCCGGGAGCTGTTCATGACGGACCGGGAACGGC
TGGAGGAGGCACGGCAGCGTGAGCTGCAACGGCAGGAACTCCTCATGCAGAAGCGGCTGGCCATGGAGTC
CAACAAGATCCTCCAGGAGCAGCAGGAGATGGAGCGCCAGAGGAGAAAGGAGATCGCCCAGAAGGCTGCC
GAGGAGAATGAGAGATACCGGAAGGAGATGGAACAGATCTCGGAGGAGGAAGAGAAGTTTAAGAAGCAGT
GGAAAGAAGACTGGGGTTCAAAGGAGCAGCTCATTCTGCCTAAGACCATCACCGCAGAGGTGCACCCGGT
GCCCCTTCGCAAGCCCAAGTATGATCAGGGAGTGGAGCCGGCAGACCACTTGGATGGAAGCACGGAGGAG
CAGAGACAGCAGGATTTTCGAAAATACGAAGAAGGCTTTGATCCCTACTCCATGTTCTCGCCAGAGCAGA
TCGCAGGGAAGGACGTCCGGCTTCTGCGAATCAAGAAGGAGGGGTCTTTAGACTTGGCCCTGGAGGGAGG
CGTGGACTCCCCCGTGGGGAAGGTGGTCGTCTCTGCTGTTTATGAAGGGGGAGCTGCGGAGAGGCATGGT
GGCGTTGTGAAAGGGGATGAGATCATGGCCATCAATGGCAAGATTGTGACGGACTACACCCTGGCTGAGG
CCGAGGCTGCCCTACAGAAGGCCTGGAATCAGGGCGGGGACTGGATAGACCTTGTGGTTGCTGTCTGTCC
CCCTAAGGAGTATGATGACGAGCTAACCTTCTTTTAA

Translation (548 aa):
MDRKVAREFRHKVDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPNRLPLFDAIRPLIPLKH
QVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGY
SISSCTHEEVINLIRTKKTVSIKVRHIGLIPVKSSPEESLKWQYVDQFVSESGGVRGGLGSPGNRTTKEK
KVFISLVGSRGLGCSISSGPIQKPGIFVSHVKPGSLSAEVGLETGDQIVEVNGIDFTNLDHKEAVNVLKS
SRSLTISIVAGAGRELFMTDRERLEEARQRELQRQELLMQKRLAMESNKILQEQQEMERQRRKEIAQKAA
EENERYRKEMEQISEEEEKFKKQWKEDWGSKEQLILPKTITAEVHPVPLRKPKYDQGVEPADHLDGSTEE
QRQQDFRKYEEGFDPYSMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHG
GVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELTFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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