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Report for CCDS26996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26996.1 Public Mus musculus 14 Ccdc198 23 108 98 CCDS HistoryNCBI Gene:67082Re-query CCDS DB by CCDS ID:26996.1Re-query CCDS DB by GeneID:67082See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26996.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228936.1 ENSMUSP00000154726.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228936.1Link to Ensembl Protein Viewer:ENSMUSP00000154726.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228936Re-query CCDS DB by Protein ID:ENSMUSP00000154726
Original member Current member NCBI NM_025956.4 NP_080232.3 Accepted alive Link to Nucleotide Sequence:NM_025956.4Link to Protein Sequence:NP_080232.3Re-query CCDS DB by Nucleotide ID:NM_025956Re-query CCDS DB by Protein ID:NP_080232Link to BLAST:NP_080232.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080232.3 294 Q9CPZ1 294 100% 0 0

Chromosomal Locations for CCDS 26996.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 49226566 49226801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49232812 49232971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49234463 49234564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49235880 49235966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49243729 49243811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49245041 49245257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGGCCTGGGCCACTCCAAGGCTCACCCTCGGGTGATCAAAGTCACACCTTTACAAAGCCAAGAAACAG
AGACACCCTCAACTGGCCCTGTGTTCTTTGCATTGAATCGGAACCTGGAAGAAGAAAGCTCATTCACGAG
ACTGCAGGACCAGAATCGAACTCGAGAAGGACAGCTACCACCGCTTCGAGAAACTTGGTATGGAAGACTC
CCGGCAGTATCCAGGGCCATGTATCTTGACATCCCACTGAAACATGAAGAAACAAGTATTATCAAAAGGC
ATCCACCCCGAAGAATTCAAAAGCTTGAACCCATTGACCTGCCACAAGCAATTACCTCTGAAAGGCTTCT
GTGCCATCAAGAAGGCAGAACAAAGTCCAACACAAAGCAGGAAAATGAGAAGAAAATTCAACTTCCTATG
TACACTTCTGGGAAAAGACAATATTTGCATAAGATGAAAATGCTAGAGATGAACCATAAAAGACAAGAGG
CCCAAATGGAGTTGAGGAAGAGTCTTCTGAGTAAGGCGATGCTTGATATGCAAAAGCTGAAGGACCATAA
TGGCAATAAAATCGCCCAGAGCAAGCCAAGGAGCAACGGCTATGACATTCTCACCATACTGCCTAATGAA
AACATAAACAGAGATCCAGGAAATCCCCAAGATGAAGAATTCTTGGACTGTCACACAGAGAATGACTATT
ATGTCCGGAAAATTGGCAAAATGGAAACATGGCTCCGTGAACAAGAAGCCCGGGGACAGCTTTTCTGGGA
CAGTTCCAGCTCCGACTCTGATGAGCTTGAGAAAGATGAGAGGAGACCACAAGCACTGGTGAGGACCAAG
ACAGAGAAGATCCCTCTTTATGATGACTTTTACGACAGTGCTTAA

Translation (294 aa):
MGLGHSKAHPRVIKVTPLQSQETETPSTGPVFFALNRNLEEESSFTRLQDQNRTREGQLPPLRETWYGRL
PAVSRAMYLDIPLKHEETSIIKRHPPRRIQKLEPIDLPQAITSERLLCHQEGRTKSNTKQENEKKIQLPM
YTSGKRQYLHKMKMLEMNHKRQEAQMELRKSLLSKAMLDMQKLKDHNGNKIAQSKPRSNGYDILTILPNE
NINRDPGNPQDEEFLDCHTENDYYVRKIGKMETWLREQEARGQLFWDSSSSDSDELEKDERRPQALVRTK
TEKIPLYDDFYDSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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