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Report for CCDS50056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50056.1 Public Mus musculus 17 Hsf2bp 23 108 98 CCDS HistoryNCBI Gene:74377Re-query CCDS DB by CCDS ID:50056.1Re-query CCDS DB by GeneID:74377See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002145.11 ENSMUSP00000002145.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002145.11Link to Ensembl Protein Viewer:ENSMUSP00000002145.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002145Re-query CCDS DB by Protein ID:ENSMUSP00000002145
Original member Current member EBI ENSMUST00000238192.1 ENSMUSP00000157466.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238192.1Link to Ensembl Protein Viewer:ENSMUSP00000157466.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238192Re-query CCDS DB by Protein ID:ENSMUSP00000157466
Original member Current member NCBI NM_028902.1 NP_083178.1 Accepted alive Link to Nucleotide Sequence:NM_028902.1Link to Protein Sequence:NP_083178.1Re-query CCDS DB by Nucleotide ID:NM_028902Re-query CCDS DB by Protein ID:NP_083178Link to BLAST:NP_083178.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083178.1 338 Q9D4G2 338 100% 0 0

Chromosomal Locations for CCDS 50056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31946603 31946811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31987348 31987451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32007676 32007793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32011176 32011308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32013318 32013467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32022766 32022869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32033261 32033411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32034445 32034492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGCCGCAACCGTGGGCGACGGGTCCGGTACTGAGGAGGCCTGCCGGAACATGGAATCTAAAGAAGAAT
TTGTTAAAGTCAGAAAGAAGGACCTGGAACGGCTGACGACGGAAGTGATGCAAATACGGGACTTCTTACC
CAGAATACTAAATGGGGAGTTACTGGAAAGTTTCCAGAAATTAAAGATGGTAGAAAAAAACCTGGAAAGA
AAAGAACAAGAATTAGAGCAACTGATAATGGACCGTGAACACTTCAAAGCCCGGCTAGAAACTGCACAGG
CAGACAGTGGGAGGGAGAAGAAGGAGAAGTTGGCTCTTCGACAGCAGCTGAATGAGGCAAAACAGCAGCT
CCTCCAGCAGGCAGAGTATTGCACACAAATGGGAGCTGTCACCTGTACCCTCCTCTGGGGGGTTTCCAGC
AGCGAGGAGGTCGTCAAAACCATTCTAGGAGGAGACAAAGCATTGAAGTTTTTCAACATAACTGGCCAGA
CGATGGAGAGTTTTGTGAAGTCATTGGATGGGGATGTCAAGGAGGTTGATTCTGATGAAAATCAATTTGT
CTTTGCACTGGCTGGAATTGTAACAAATGTTGCCGCCATTGCGTGTGGTCGTGAATTCTTGGTGAATTCC
AGCCGGGTGCTCCTGGACACCATGTTGCAGCTGCTGGGGGACTTAAAGCCTGGCCAGTGCACCAAACTCA
AAGTTCTAATGCTGATGTCCCTGTATAATGTGAGCATCAATTCAAAAGGCTTGAAATACATCACTGAGAG
TCCTGGATTTATCCCTTTGCTGTGGTGGCTTTTGAGTGATCCAGACGCGGAAGTGTGTCTTCATACCCTG
CGGCTCATCCAGTCTGTGGTTCTAGAACCAGACGTCTTCTCCAAGGTGGCCTCTGAGCTCCAGAGCTCCT
TACCCTTGCAGCGCATCCTGGCCATGTCCAAGAGCCGCAACTCCCACCTGCAGTCTGCTGCCCAGGAGCT
CCTGGAAGACCTCCGCGCCCTGGACTGTAATGTTTAG

Translation (338 aa):
MAATVGDGSGTEEACRNMESKEEFVKVRKKDLERLTTEVMQIRDFLPRILNGELLESFQKLKMVEKNLER
KEQELEQLIMDREHFKARLETAQADSGREKKEKLALRQQLNEAKQQLLQQAEYCTQMGAVTCTLLWGVSS
SEEVVKTILGGDKALKFFNITGQTMESFVKSLDGDVKEVDSDENQFVFALAGIVTNVAAIACGREFLVNS
SRVLLDTMLQLLGDLKPGQCTKLKVLMLMSLYNVSINSKGLKYITESPGFIPLLWWLLSDPDAEVCLHTL
RLIQSVVLEPDVFSKVASELQSSLPLQRILAMSKSRNSHLQSAAQELLEDLRALDCNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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