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Report for CCDS52370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52370.1 Public Mus musculus 7 Rps13 23 108 98 CCDS HistoryNCBI Gene:68052Re-query CCDS DB by CCDS ID:52370.1Re-query CCDS DB by GeneID:68052See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170953.2 ENSMUSP00000126294.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170953.2Link to Ensembl Protein Viewer:ENSMUSP00000126294.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170953Re-query CCDS DB by Protein ID:ENSMUSP00000126294
Original member Current member NCBI NM_026533.3 NP_080809.1 Accepted alive Link to Nucleotide Sequence:NM_026533.3Link to Protein Sequence:NP_080809.1Re-query CCDS DB by Nucleotide ID:NM_026533Re-query CCDS DB by Protein ID:NP_080809Link to BLAST:NP_080809.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080809.1 151 P62301 151 100% 0 0

Chromosomal Locations for CCDS 52370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 116331550 116331583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116332379 116332479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116332929 116333098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116333696 116333774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116333900 116333948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116334085 116334107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGGGTCGCATGCACGCTCCCGGGAAGGGCCTGTCCCAGTCGGCGCTGCCCTACCGCCGTAGCGTCCCCA
CGTGGCTGAAGTTGACGTCTGACGACGTGAAGGAACAGATTTACAAATTGGCCAAGAAAGGCCTGACTCC
CTCCCAGATAGGTGTAATCCTGAGGGACTCACACGGGGTGGCCCAGGTCCGTTTTGTGACTGGAAATAAA
ATCTTGAGAATCCTCAAGTCCAAAGGCCTTGCCCCTGACCTCCCCGAGGATCTCTACCATTTGATTAAGA
AAGCTGTTGCTGTCCGAAAGCACCTTGAGAGGAACAGAAAGGATAAGGATGCTAAATTCCGCCTGATTCT
GATAGAGAGCAGAATTCACCGATTGGCTCGATACTATAAGACTAAGCGGGTGCTCCCACCTAATTGGAAA
TATGAGTCATCCACAGCCTCTGCTCTAGTGGCATAA

Translation (151 aa):
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK
ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK
YESSTASALVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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