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Report for CCDS19375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19375.1 Public Mus musculus 5 Tecrl 23 108 98 CCDS HistoryNCBI Gene:243078Re-query CCDS DB by CCDS ID:19375.1Re-query CCDS DB by GeneID:243078See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19375.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053543.10 ENSMUSP00000062122.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053543.10Link to Ensembl Protein Viewer:ENSMUSP00000062122.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053543Re-query CCDS DB by Protein ID:ENSMUSP00000062122
Original member Current member NCBI NM_153801.3 NP_722496.2 Accepted alive Link to Nucleotide Sequence:NM_153801.3Link to Protein Sequence:NP_722496.2Re-query CCDS DB by Nucleotide ID:NM_153801Re-query CCDS DB by Protein ID:NP_722496Link to BLAST:NP_722496.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722496.2 361 Q8BFZ1 361 100% 0 0

Chromosomal Locations for CCDS 19375.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 83279214 83279341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83280042 83280087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83280511 83280596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83284221 83284278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83289988 83290031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83291240 83291312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83294574 83294679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83300850 83300965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83309203 83309306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83313284 83313328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83338249 83338300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83354773 83355000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGTTCAAAAGGCACAAGTCCCTGGAACGCAAGAGGGAATTGTTATTCCAGGGACTGCCACAGTCCACAA
TGAAGAATAATGCGAGAAATTTCCACTCTTTGTCACAACTTGTACTCTCAGCAGGCCCGCTCAAAACTAC
TACAGCAGTCAAACATTCAAAAACGACTCACTTTGAGATCGAAATACTGGATGCTCATACAAGAAAACAA
ATATGTATTGTGGATAAGGTCACACAAACATCAACTATTCATGATGTCAAACAGAAGTTTCACAAAGCAT
GTCCAAAGTGGTACCCTTCTCGAATTGGCCTACAACTAGAATATGGTGGCCCATATTTGAGGGACTACAT
CACAGTTCAAAGTGTTGCAGCTTCTTCAATTATCACACTCTATTTTACAGACTTGGGTCAGCAAGTCGGG
TGGACTACAGTCTTTTTGGCTGAATACTCAGGACCTCTGTTAATATACCTTCTTTTTTACTTGAGGAGCT
CATACATATATGATGTCAAGGAGAGCACTAGATGGCCCCGGCACCCTGTGGTACACTTGGCTTTCTTCTG
CCATTGTATCCACTACATCCGACTCCTCCTGGAGACTTTATTTGTTCACAAAGTTTCTACAGGACACAGT
CCTATGAAAAACTTGATAAAGGGTTGTGCATTTTATTGGGGATTCACTTCTTGGATGGCTTATTATATTA
ATCACCCAAGATATACACCACCATCATTTGGAAACAGGCAAGTAATAGTGTCTGCTATCAACTTTCTGTT
TTGTGAAGCTGGAAATCATTTCATCAATACAGTTTTGGCTCATCCAAATCACACAGGTAGCAATGCCTGT
TTCCCAAGTCCAAATTACAACCCCTTTACATGGTTGTTTTTCCTGGTTTCCTGTCCTAACTATACCTATG
AGATCGGATCTTGGATTAGTTTCACAGTTATGACCCAGACACTTCCAGTTGGTATTTTCACAATCTTAAT
GACCATCCAGATGTCTCTGTGGGCACGAAAGAAGCATAAAATATATCGGAAGAAGTTCAACTCATATGTT
CATAGGAAATCAGCCATAATTCCACTCATATTATAA

Translation (361 aa):
MFKRHKSLERKRELLFQGLPQSTMKNNARNFHSLSQLVLSAGPLKTTTAVKHSKTTHFEIEILDAHTRKQ
ICIVDKVTQTSTIHDVKQKFHKACPKWYPSRIGLQLEYGGPYLRDYITVQSVAASSIITLYFTDLGQQVG
WTTVFLAEYSGPLLIYLLFYLRSSYIYDVKESTRWPRHPVVHLAFFCHCIHYIRLLLETLFVHKVSTGHS
PMKNLIKGCAFYWGFTSWMAYYINHPRYTPPSFGNRQVIVSAINFLFCEAGNHFINTVLAHPNHTGSNAC
FPSPNYNPFTWLFFLVSCPNYTYEIGSWISFTVMTQTLPVGIFTILMTIQMSLWARKKHKIYRKKFNSYV
HRKSAIIPLIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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