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Report for CCDS54282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54282.1 Public Homo sapiens 19 QPCTL 24 110 108 CCDS HistoryNCBI Gene:54814Re-query CCDS DB by CCDS ID:54282.1Re-query CCDS DB by GeneID:54814See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54282.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366382.8 ENSP00000387944.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366382.8Link to Ensembl Protein Viewer:ENSP00000387944.2Re-query CCDS DB by Nucleotide ID:ENST00000366382Re-query CCDS DB by Protein ID:ENSP00000387944
Original member Current member NCBI NM_001163377.2 NP_001156849.1 Accepted alive Link to Nucleotide Sequence:NM_001163377.2Link to Protein Sequence:NP_001156849.1Re-query CCDS DB by Nucleotide ID:NM_001163377Re-query CCDS DB by Protein ID:NP_001156849Link to BLAST:NP_001156849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156849.1 288 Q9NXS2-3 288 100% 0 0

Chromosomal Locations for CCDS 54282.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45692704 45692910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45693413 45693556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45698547 45698699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45698801 45698900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45701798 45701914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45702904 45703049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGCGTTCCGGGGGCCGCGGGCGACCCCGCCTGCGGCTGGGGGAACGTGGCCTCATGGAGCCACTCTTGC
CGCCGAAGCGCCGCCTGCTACCGCGGGTTCGGCTCTTGCCTCTGTTGCTGGCGCTGGCCGTGGGCTCGGC
GTTCTACACCATTTGGAGCGGCTGGCACCGCAGGACTGAGGAGCTGCCGCTGGGCCGGGAGCTGCGGGTC
CCATTGATCGGAAGCCTCCCCGAAGCCCGGCTGCGGAGGGTGGTGGGACAACTGGATCCACAGCGTCTCT
GGAGCACTTATCTGCGCCCCCTGCTGGTTGTGCGAACCCCGGGCAGCCCGGGAAATCTCCAAGTCAGAAA
GGCAGCCCCGGTGACCCTGCAACTGCTCTTCTTGGATGGTGAAGAGGCGCTGAAGGAGTGGGGACCCAAG
GACTCCCTTTACGGTTCCCGGCACCTGGCCCAGCTCATGGAGTCTATACCTCACAGCCCCGGCCCCACCA
GGATCCAGGCTATTGAGCTCTTTATGCTTCTTGATCTCCTGGGAGCCCCCAATCCCACCTTCTACAGCCA
CTTCCCTCGCACGGTCCGCTGGTTCCATCGGCTGAGGAGCATTGAGAAGCGTCTGCACCGTTTGAACCTG
CTGCAGTCTCATCCCCAGGAAGTGATGTACTTCCAACCCGGGGAGCCCTTTGGCTCTGTGGAAGACGACC
ACATCCCCTTCCTCCGCAGAGGGGTACCCGTGCTCCATCTCATCTCCACGCCCTTCCCTGCTGTCTGGCA
CACCCCTGCGGACACCGAGGTCAATCTCCACCCACCCACGGTACACAACTTGTGCCGCATTCTCGCTGTG
TTCCTGGCTGAATACCTGGGGCTCTAG

Translation (288 aa):
MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGSAFYTIWSGWHRRTEELPLGRELRV
PLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKAAPVTLQLLFLDGEEALKEWGPK
DSLYGSRHLAQLMESIPHSPGPTRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRSIEKRLHRLNL
LQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHTPADTEVNLHPPTVHNLCRILAV
FLAEYLGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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