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Report for CCDS45001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45001.1 Public Homo sapiens 12 LRRC43 24 110 108 CCDS HistoryNCBI Gene:254050Re-query CCDS DB by CCDS ID:45001.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 45001.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339777.5 ENSP00000344233.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339777.5Link to Ensembl Protein Viewer:ENSP00000344233.4Re-query CCDS DB by Nucleotide ID:ENST00000339777Re-query CCDS DB by Protein ID:ENSP00000344233
Original member Current member NCBI NM_001098519.2 NP_001091989.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098519.2Link to Protein Sequence:NP_001091989.1Re-query CCDS DB by Nucleotide ID:NM_001098519Re-query CCDS DB by Protein ID:NP_001091989Link to BLAST:NP_001091989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091989.1 656 Q8N309-1 656 100% 0 0

Chromosomal Locations for CCDS 45001.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 122183145 122183294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122184519 122184779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122186190 122186300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122187701 122187840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122190130 122190368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122191380 122191567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122192745 122193004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122200189 122200330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122200532 122200660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122200746 122200934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122201296 122201329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122203315 122203442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGGAGGCGTCGTACGAGTCCGAGTCCGAGTCCGAGTCTGAGGCCGGGCCTGGGACTCAGCGGCCCGGGA
CCGGGACCGTGAGCGCGGCCGTGCGCGAGCACTTGCGGAAGCTGTGTCTGCGCGAGTTCCCGTGCGGTGC
CGGCAGCTGGAATAAGTCGCGCTTTCTTCCTCAAACTTGGCGAACTTGGAGGGAGCTTGTCCCCAGAGAG
GAGGATGTGGTGAGCCCCGGAGAGGAGACGGTGGAGGCCCTGCTGGGCCTGGTCCGCAGCCGCCACTCCC
CCTGGGCTCTGCTGAACAACTCGAATGCAGAAGACAGTTTCCTGAGAGAATTGGCCATCCGGAACCCGCT
GACGATCACAGACACCTTCTTCTACTCCTACTTCCGGTCCCTGCGGGTAATAGACAAGAAGGTCACCCTG
GTGGATAAAGACCTCCTGAAATTTCTAAAGCTGGAGGAGTTGGTACTGAGCGCCAATCGAATCAAGGAGG
TGGATGCCACCAATCTGCCCCCCACACTCAAGGTGCTGGAGCTCTACGGCAATGAGATCAGCAGCATGGA
GTGTCTGTGTGCCCACCCACCCGCCGGCCTGCAGCACTTGGGGTTAGGCCACAACAAACTTCTAGGCCCC
TTGGAAAGTCTCTACGTCACCGCTAATCACTGGCCCAACCTCGTCTCCCTGGACCTGGGCTTCAACGACC
TGACAGACCTGCAGAGCATGGTCACCAGCCTGAGGACCCTCCGGCACCTGCGACTCCTGGTGCTGCAGGG
AAACCCACTGGCCTTGGTGCCCTACTACCGCGGCCTCACCATCGACAGCCTGGCCCAGCTCTGCGTGCTG
GACGACATCACCGTGTCTCCCAATGAGAAGCATCTCTTCCGGGGGCTCAGCCTCAATGGCGATCTCTTGG
CACAGGAGGCGCAGTTTGTGGTGACCATCGGAAACATCAGAGGAGTCCTGGACACCTCTGTCTTAGACCC
GGAACCCAGGCCCGAAGGCCCTTTCATCACTTACAACTATTACGTGACCTATGATTTTGTGAAAGATGAA
GAAGGCGAAATGAATGAGTCCGCGGGCGTCCTGGCCGAGATCGTCAAGCCCTCTCCCAGCTTAGAATTAT
TAGTTGAGGAATCTCCTGAAGAGGTCGTGGAAGACGTCATCGAAGACATTGTTGAAGAGGTTACTGAAGA
GGTCGAAGGGTCTCTGGAGTCTGAGGTGGAGGAGTCAGGAGAGTCGGAGCTGTCTGTCATCTCGGGGCCT
TCGACCATCTTGCAGATGCCGAGGGCCTCTGCAGAAGAGCTGGCCAAGTTGAGGCTGCGTATAGATCCCC
GGCTCTGCCCGTCCCCAGGGACTGTCCTCTTCAGCACTGCCCACAAGCCCTGGGCTGAGGTCATCCCCTG
CAGTTACGAGATGCAGCACTCTCTCAGGGACCTGGTCCCACTGAAGGCCTTCCTGCTGGCGGGGACCACC
GTGACCATCGTGGAGGAGAAGATTCTCTCCTGGCCTGTGGTGCTACCTGCTGTTGACAGTCCCCTGTCTG
CCAAGAAAGGAAAGGGGGAGAAAGACAAGAAAGGGAAGGAGAAAGACAGGACGGGGAAAGGAGAGAAAGA
GCCGGCCAAGGAGTGGAAGGTGCTGAAGAAGAAGAAAGAGCCGCCCAAGGAGCTCCGGCAGGACCCCCCC
ATCCTCCAGGTGCTGGGCCGGGGCCTGGTGATCCTGGAGCCCCTGCTCGCCGGGGAGCCCCTGGTGTCCA
CCGTGTGCAACTTCGGCGTGGTCCGCACATTGACATCTGACAGGCTGACGTTGGCCAGGGATTCAAAGAA
GATTAAGAAAGTTGCCAAAAAAGAAAAGCCGAAAGCCGTGATTCCGATCTACGAAGGCGATTACCACCCT
GAGCCCCTGACCGTAGAGGTGCAGATCCAGCTGAACCAGTGCCGCTCGGCGGAGGAGGCTCTGCGCATGT
TCGCCGTGTAG

Translation (656 aa):
MEASYESESESESEAGPGTQRPGTGTVSAAVREHLRKLCLREFPCGAGSWNKSRFLPQTWRTWRELVPRE
EDVVSPGEETVEALLGLVRSRHSPWALLNNSNAEDSFLRELAIRNPLTITDTFFYSYFRSLRVIDKKVTL
VDKDLLKFLKLEELVLSANRIKEVDATNLPPTLKVLELYGNEISSMECLCAHPPAGLQHLGLGHNKLLGP
LESLYVTANHWPNLVSLDLGFNDLTDLQSMVTSLRTLRHLRLLVLQGNPLALVPYYRGLTIDSLAQLCVL
DDITVSPNEKHLFRGLSLNGDLLAQEAQFVVTIGNIRGVLDTSVLDPEPRPEGPFITYNYYVTYDFVKDE
EGEMNESAGVLAEIVKPSPSLELLVEESPEEVVEDVIEDIVEEVTEEVEGSLESEVEESGESELSVISGP
STILQMPRASAEELAKLRLRIDPRLCPSPGTVLFSTAHKPWAEVIPCSYEMQHSLRDLVPLKAFLLAGTT
VTIVEEKILSWPVVLPAVDSPLSAKKGKGEKDKKGKEKDRTGKGEKEPAKEWKVLKKKKEPPKELRQDPP
ILQVLGRGLVILEPLLAGEPLVSTVCNFGVVRTLTSDRLTLARDSKKIKKVAKKEKPKAVIPIYEGDYHP
EPLTVEVQIQLNQCRSAEEALRMFAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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