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Report for CCDS26488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26488.1 Public Mus musculus 13 Tpmt 23 108 98 CCDS HistoryNCBI Gene:22017Re-query CCDS DB by CCDS ID:26488.1Re-query CCDS DB by GeneID:22017See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021806.10 ENSMUSP00000021806.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021806.10Link to Ensembl Protein Viewer:ENSMUSP00000021806.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021806Re-query CCDS DB by Protein ID:ENSMUSP00000021806
Original member Current member NCBI NM_016785.2 NP_058065.2 Accepted alive Link to Nucleotide Sequence:NM_016785.2Link to Protein Sequence:NP_058065.2Re-query CCDS DB by Nucleotide ID:NM_016785Re-query CCDS DB by Protein ID:NP_058065Link to BLAST:NP_058065.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058065.2 240 O55060 240 99.5833% 0 1

Chromosomal Locations for CCDS 26488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 47025365 47025477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47027252 47027296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47028882 47028967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47032418 47032492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47035021 47035073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47035895 47036027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47040104 47040196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47041399 47041523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGTCCCTTGATATGAAAGAGCACCCTGATGCTGAGGTACAAAAGAACCAAGTACTAACCCTGGAAGACT
GGAAAGAGAAGTGGGTGACCCGTCACATCTCATTCCATCAGGAGCAAGGGCATCAGCTGTTGAAGAAGCA
TTTGGATACATTTCTTAAAGGCCAGAGTGGACTGCGAGTGTTTTTCCCCCTCTGTGGAAAAGCCGTTGAG
ATGAAATGGTTCGCAGATCGGGGCCACACTGTAGTTGGTGTGGAAATCAGTGAAATTGGGATTCGGGAAT
TTTTTGCAGAACAGAATCTTTCCTACACAGAAGAACCGCTCGCCGAAATTGCTGGAGCCAAAGTATTTAA
GAGTTCTTCAGGGAGCATTTCCTTATACTGCTGCAGCATATTTGATCTTCCTAGAGCAAACATTGGCAAG
TTTGACAGGATTTGGGATAGAGGAGCATTAGTGGCTATCAATCCAGGCGATCATGATCGCTATGCAGATA
TAATACTGTCCCTACTGAGAAAAGAGTTTCAGTACCTTGTGGCTGTCCTTTCTTATGATCCAACAAAACA
CGCAGGCCCACCATTTTATGTTCCATCTGCTGAACTTAAAAGGTTATTTGGTACAAAATGCAGCATGCAA
TGCCTTGAAGAGGTAGATGCTTTGGAAGAAAGGCATAAAGCCTGGGGTCTTGACTACCTTTTTGAAAAAT
TGTATCTCCTTACAGAGAAGTAA

Translation (240 aa):
MSLDMKEHPDAEVQKNQVLTLEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAVE
MKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGK
FDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGTKCSMQ
CLEEVDALEERHKAWGLDYLFEKLYLLTEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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