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Report for CCDS1785.4 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1785.4 Public Homo sapiens 2 GPATCH11 24 110 108 CCDS HistoryNCBI Gene:253635Re-query CCDS DB by CCDS ID:1785.4See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 1785.3
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in higher primates.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 1785.4

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000674370.2 ENSP00000501347.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674370.2Link to Ensembl Protein Viewer:ENSP00000501347.1Re-query CCDS DB by Nucleotide ID:ENST00000674370Re-query CCDS DB by Protein ID:ENSP00000501347
Original member Current member NCBI NM_001371858.3 NP_001358787.2 Accepted alive Link to Nucleotide Sequence:NM_001371858.3Link to Protein Sequence:NP_001358787.2Re-query CCDS DB by Nucleotide ID:NM_001371858Re-query CCDS DB by Protein ID:NP_001358787Link to BLAST:NP_001358787.2
Original member Current member NCBI NM_001371859.3 NP_001358788.2 Accepted alive Link to Nucleotide Sequence:NM_001371859.3Link to Protein Sequence:NP_001358788.2Re-query CCDS DB by Nucleotide ID:NM_001371859Re-query CCDS DB by Protein ID:NP_001358788Link to BLAST:NP_001358788.2
Original member Current member NCBI NM_174931.4 NP_777591.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174931.4Link to Protein Sequence:NP_777591.4Re-query CCDS DB by Nucleotide ID:NM_174931Re-query CCDS DB by Protein ID:NP_777591Link to BLAST:NP_777591.4

Chromosomal Locations for CCDS 1785.4

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 37088382 37088440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37089640 37089866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37090681 37090722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37091916 37092036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37092165 37092255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37094082 37094195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37095437 37095518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37096208 37096263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGAAGTTGAACATGGCAGAAGAAGAGGACTATATGTCTGATTCCTTCATTAATGTCCAAGAAGATATCA
GACCAGGATTGCCAATGCTAAGGCAAATCCGAGAAGCCCGTCGAAAAGAAGAAAAGCAACAGGAAGCCAA
TTTGAAAAACAGGCAGAAGAGTTTAAAAGAAGAAGAACAAGAAAGACGTGACATTGGGTTGAAGAATGCA
CTAGGCTGTGAAAACAAAGGGTTTGCCTTGCTCCAAAAGATGGGCTATAAAAGTGGTCAGGCACTTGGCA
AGAGTGGGGGTGGTATTGTTGAACCAATTCCTCTCAATATCAAAACAGGGAAAAGTGGCATTGGTCATGA
GGCATCATTAAAACGGAAAGCAGAGGAAAAATTGGAAAGCTACAGAAAAAAGATTCACATGAAAAACCAA
GCTGAAGAAAAAGCTGCAGAACAGTTTCGAATGCGACTTAAAAATAAGCAAGATGAAATGAAGCTAGAAG
GAGATCTCAGAAGAAGCCAGCGAGCCTGTCAACAACTGGATGTCCAGAAAAATATTCAGGTTCCCAGGGA
AGCATGGTACTGGTTGAGGCTTGAAGAGGAGACTGAAGAAGATGAAGAAGAAAAAGAACAGGATGAAGAT
GAATATAAGAGTGAAGATTTAAGCGTACTGGAAAAATTACAAATATTGACTAGTTATTTAAGAGAAGAAC
ATCTATATTGTATTTGGTGTGGAACAGCCTATGAAGATAAAGAAGACCTATCTTCAAATTGTCCAGGACC
AACTTCTGCAGATCATGACTAA

Translation (263 aa):
MKLNMAEEEDYMSDSFINVQEDIRPGLPMLRQIREARRKEEKQQEANLKNRQKSLKEEEQERRDIGLKNA
LGCENKGFALLQKMGYKSGQALGKSGGGIVEPIPLNIKTGKSGIGHEASLKRKAEEKLESYRKKIHMKNQ
AEEKAAEQFRMRLKNKQDEMKLEGDLRRSQRACQQLDVQKNIQVPREAWYWLRLEEETEEDEEEKEQDED
EYKSEDLSVLEKLQILTSYLREEHLYCIWCGTAYEDKEDLSSNCPGPTSADHD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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