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Report for CCDS59280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59280.1 Public Homo sapiens 17 RDM1 24 110 108 CCDS HistoryNCBI Gene:201299Re-query CCDS DB by CCDS ID:59280.1Re-query CCDS DB by GeneID:201299See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000617591.4 ENSP00000479622.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617591.4Link to Ensembl Protein Viewer:ENSP00000479622.1Re-query CCDS DB by Nucleotide ID:ENST00000617591Re-query CCDS DB by Protein ID:ENSP00000479622
Original member Current member NCBI NM_001163124.1 NP_001156596.1 Accepted alive Link to Nucleotide Sequence:NM_001163124.1Link to Protein Sequence:NP_001156596.1Re-query CCDS DB by Nucleotide ID:NM_001163124Re-query CCDS DB by Protein ID:NP_001156596Link to BLAST:NP_001156596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156596.1 143 Q8NG50-11 143 100% 0 0

Chromosomal Locations for CCDS 59280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35918342 35918443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35925515 35925637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35930076 35930282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGCATTTACTTGTCCCACCCCCACAGCATTCTCTGTTCACAGCATTTTCTCAGTTTGGCCTTCTGTATT
CAGTCCGGGTCTTCCCAAATGCTGCAGTGGCCCATCCTGGTTTCTATGCCGTCATTAAGTTTTATTCTGC
AAGGGCTGCCCACAGAGCCCAAAAGGCATGCGACCGGAAGCAGCTTTTTCAGAAATCTCCAGTCAAGGTT
CGTCTTGGCACCAGACATAAGGCAGTTCAACATCAAGCCCTTGCCCTGAACAGTTCCAAATGCCAAGAAC
TGGCGAATTACTACTTTGGTTTCAATGGGTGTTCCAAAAGGATCATCAAGGTCCCTTGCTCTCCCTGGAA
GCAGTATGGCCAAGAGGAGGAAGGGTATCTCTCGGATTTCAGCTTGGAGGAGGAAGAGTTCAGGCTGCCA
GAACTTGACTAG

Translation (143 aa):
MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV
RLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLP
ELD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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