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Report for CCDS6213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6213.1 Public Homo sapiens 8 RDH10 24 110 108 CCDS HistoryNCBI Gene:157506Re-query CCDS DB by CCDS ID:6213.1Re-query CCDS DB by GeneID:157506See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6213.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000240285.10 ENSP00000240285.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000240285.10Link to Ensembl Protein Viewer:ENSP00000240285.5Re-query CCDS DB by Nucleotide ID:ENST00000240285Re-query CCDS DB by Protein ID:ENSP00000240285
Original member Current member NCBI NM_172037.5 NP_742034.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_172037.5Link to Protein Sequence:NP_742034.1Re-query CCDS DB by Nucleotide ID:NM_172037Re-query CCDS DB by Protein ID:NP_742034Link to BLAST:NP_742034.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742034.1 341 Q8IZV5 341 100% 0 0

Chromosomal Locations for CCDS 6213.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 73295290 73295578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 73297194 73297429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 73319096 73319194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 73320932 73321077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 73322679 73322810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 73322913 73323036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGAACATCGTGGTGGAGTTCTTCGTGGTCACTTTCAAAGTGCTCTGGGCGTTCGTGCTGGCCGCGGCGC
GCTGGCTGGTGCGGCCCAAGGAGAAGAGCGTGGCGGGCCAGGTGTGCCTCATCACCGGCGCCGGCAGCGG
CCTGGGCCGCCTCTTCGCGCTGGAGTTCGCCCGGCGTCGGGCGCTGCTGGTGCTGTGGGACATCAACACG
CAAAGCAACGAGGAGACGGCTGGCATGGTGCGCCACATCTACCGCGACCTGGAGGCGGCCGACGCCGCTG
CGCTGCAAGCTGGGAATGGTGAGGAAGAAATTCTGCCCCACTGTAACTTGCAGGTTTTTACCTACACCTG
TGACGTGGGGAAGAGGGAGAACGTCTACCTGACGGCTGAAAGAGTCCGCAAGGAGGTTGGCGAAGTCTCA
GTCCTGGTCAATAATGCTGGTGTGGTCTCTGGGCATCACCTTCTGGAATGTCCTGATGAGCTCATTGAGA
GAACCATGATGGTCAATTGCCATGCACACTTCTGGACCACTAAGGCTTTTCTTCCTACGATGCTGGAGAT
TAATCATGGTCATATTGTGACAGTTGCAAGTTCCTTGGGATTGTTCAGTACTGCCGGAGTTGAGGATTAC
TGTGCCAGTAAATTTGGAGTTGTGGGTTTTCATGAATCCCTGAGCCATGAACTAAAGGCTGCTGAAAAGG
ATGGAATTAAAACAACCTTGGTTTGCCCTTATCTTGTAGACACTGGCATGTTCAGAGGCTGCCGAATCAG
GAAAGAAATTGAGCCTTTTCTGCCACCTCTGAAGCCTGATTACTGTGTGAAGCAGGCCATGAAGGCCATC
CTCACTGACCAGCCCATGATCTGCACTCCCCGCCTCATGTACATCGTGACCTTCATGAAGAGCATCCTAC
CATTTGAAGCAGTTGTGTGCATGTATCGGTTCCTAGGAGCGGACAAGTGTATGTACCCCTTTATTGCTCA
AAGAAAGCAAGCCACAAACAATAATGAAGCAAAAAATGGAATCTAA

Translation (341 aa):
MNIVVEFFVVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRALLVLWDINT
QSNEETAGMVRHIYRDLEAADAAALQAGNGEEEILPHCNLQVFTYTCDVGKRENVYLTAERVRKEVGEVS
VLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVEDY
CASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKPDYCVKQAMKAI
LTDQPMICTPRLMYIVTFMKSILPFEAVVCMYRFLGADKCMYPFIAQRKQATNNNEAKNGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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