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Report for CCDS27244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27244.1 Public Mus musculus 14 Rhobtb2 23 108 98 CCDS HistoryNCBI Gene:246710Re-query CCDS DB by CCDS ID:27244.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022665.3 ENSMUSP00000022665.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022665.3Link to Ensembl Protein Viewer:ENSMUSP00000022665.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000022665Re-query CCDS DB by Protein ID:ENSMUSP00000022665
Original member Current member NCBI NM_153514.5 NP_705734.4 Accepted alive Link to Nucleotide Sequence:NM_153514.5Link to Protein Sequence:NP_705734.4Re-query CCDS DB by Nucleotide ID:NM_153514Re-query CCDS DB by Protein ID:NP_705734Link to BLAST:NP_705734.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705734.4 728 Q91V93 728 100% 0 0

Chromosomal Locations for CCDS 27244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69787515 69787735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69787858 69787963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69788632 69788720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69793904 69794054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69795900 69796018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69796274 69797292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69798139 69798324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69799678 69799781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69800618 69800809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGGATTCTGACATGGATTATGAAAGGCCAAACGTAGAGACCATCAAGTGCGTGGTGGTGGGGGACAACG
CCGTGGGCAAGACTAGGCTCATCTGTGCCCGGGCCTGCAATGCCACCCTCACCCAGTACCAGTTGCTTGC
CACCCATGTGCCCACAGTGTGGGCCATTGACCAGTATCGTGTGTGCCAGGAGGTGCTAGAACGCTCCCGA
GATGTGGTAGATGACGTCAGCGTCTCCCTGCGCCTCTGGGACACCTTCGGAGACCACCACAAAGACCGGC
GTTTTGCTTATGGAAGATCCGACGTGGTGGTTTTGTGTTTCTCCATCGCCAACCCCAATTCCCTCCACCA
TGTCAAGACCATGTGGTACCCAGAAATCAAGCATTTCTGCCCCAGAGCTCCTGTCATTCTGGTGGGCTGC
CAGCTGGACCTGCGCTATGCTGACCTGGAAGCCGTTAACAGGGCCAGGAGACCTCTGGCTAGGCCCATCA
AGCCCAATGAAATCCTCCCCCCAGAGAAGGGTCGGGAAGTCGCCAAAGAGCTGGGGATCCCTTACTACGA
GACCAGTGTGGTGGCCCAGTTTGGTATCAAGGACGTCTTTGACAATGCCATTCGGGCTGCGCTCATCTCC
CGCCGCCACCTGCAGTTCTGGAAATCACATCTGCGCAATGTGCAGCGGCCTCTACTGCAAGCACCCTTCC
TCCCCCCCAAGCCACCGCCCCCCATCATCGTGGTGCCCGATCCCCCCTCCAGCAGCGAGGAGTGCCCCGC
CCACCTCCTGGAAGACCCGCTCTGTGCGGATGTCATCCTGGTGCTGCAGGAGCGCGTGCGCATCTTTGCC
CACAAAATCTACCTCTCCACCTCCTCCTCCAAATTCTATGACTTATTCCTCATGGACCTGAGTGAGGGGG
AGCTGGGGGGCCCCTCAGGGTCAGGGGGGCCCCGCCCAGAGGACCACCGGAGCCACCCTGAACAACACCA
CCATCATCACCATCACCACCATGGGCGGGACTTCCTGCTTCGGGCAGCCAGCTTTGACGTATGTGAGAGT
GTGGATGAGGCCGGCGGCTCTGGTCCGGCTGGCCTAAGGGCTTCAACCAGTGACGGGATCTTACGGGGTA
ATGGAACAGGGTACCTGCCAGGCAGAGGACGTGTGCTGTCTTCCTGGAGCCGAGCTTTTGTGAGTATCCA
GGAAGAGATGGCAGAGGATCCTCTGACCTTCAAATCCCGGCTGATGGTGGTGGTGAAGATGGATAACTCC
ATTCAGCCGGGGCCCTTCCGGGCTGTTCTCAAGTACCTGTACACAGGGGAGCTAGGTGAGAATGAGCGGG
ACCTCATGCACATTGCTCACATTGCCGAGCTGCTAGAGGTCTTTGATCTACGAATGATGGTGGCCAACAT
TCTCAACAACGAAGCCTTCATGAATCAGGAGATCACCAAGGCCTTCCATGTACGCCGGACCAACCGGGTT
AAGGAGTGTTTGGCAAAGGGCACCTTTTCAGATGTGACCTTCATCCTGGATGATGGGACCATCAGCGCCC
ATAAGCCCCTGCTGATTTCCAGCTGTGACTGGATGGCTGCCATGTTTGGGGGGCCATTTGTGGAGAGTTC
TACCAGGGAGGTGGTGTTTCCATACACAAGCAAGAGCTGCATGAGAGCTGTGTTGGAGTACCTCTATACA
GGCATGTTCACCTCCAGCCCAGACCTGGATGATATGAAGCTCATTGTCTTGGCTAACCGCCTCTGCCTGC
CGCACTTGGTTGCCCTCACAGAGCAGTACACAGTGACTGGACTGATGGAGGCGACCCAGATGATGGTGGA
CATCGATGGGGATGTCCTTGTATTCTTGGAATTGGCACAGTTCCACTGCGCGTACCAGTTGGCCGACTGG
TGTCTTCACCATATCTGCACCAACTACAACAACGTGTGCCGCAAGTTCCCCAGAGACATGAAGGCTATGT
CTCCAGAAAACCAGGAGTACTTTGAGAAACACCGGTGGCCGCCAGTCTGGTACCTGAAAGAAGAGGACCA
CTATCAGCGTGCGCGGAAGGAGCGAGAGAAAGAGGACTATTTACACCTGCGGAGGCAGCCCAAGCGGCGG
TGGCTGTTTTGGAACAGTCCCTCATCACCGTCCTCCTCAGCAGCGGGCTCAGCATCCCCCTCCTCCTCCT
CCTCGGCTGTGGTCTGA

Translation (728 aa):
MDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYRVCQEVLERSR
DVVDDVSVSLRLWDTFGDHHKDRRFAYGRSDVVVLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVILVGC
QLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKELGIPYYETSVVAQFGIKDVFDNAIRAALIS
RRHLQFWKSHLRNVQRPLLQAPFLPPKPPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRIFA
HKIYLSTSSSKFYDLFLMDLSEGELGGPSGSGGPRPEDHRSHPEQHHHHHHHHHGRDFLLRAASFDVCES
VDEAGGSGPAGLRASTSDGILRGNGTGYLPGRGRVLSSWSRAFVSIQEEMAEDPLTFKSRLMVVVKMDNS
IQPGPFRAVLKYLYTGELGENERDLMHIAHIAELLEVFDLRMMVANILNNEAFMNQEITKAFHVRRTNRV
KECLAKGTFSDVTFILDDGTISAHKPLLISSCDWMAAMFGGPFVESSTREVVFPYTSKSCMRAVLEYLYT
GMFTSSPDLDDMKLIVLANRLCLPHLVALTEQYTVTGLMEATQMMVDIDGDVLVFLELAQFHCAYQLADW
CLHHICTNYNNVCRKFPRDMKAMSPENQEYFEKHRWPPVWYLKEEDHYQRARKEREKEDYLHLRRQPKRR
WLFWNSPSSPSSSAAGSASPSSSSSAVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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