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Report for CCDS14930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14930.1 Public Mus musculus 1 Bivm 23 108 98 CCDS HistoryNCBI Gene:246229Re-query CCDS DB by CCDS ID:14930.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14930.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035991.7 ENSMUSP00000041964.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035991.7Link to Ensembl Protein Viewer:ENSMUSP00000041964.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000035991Re-query CCDS DB by Protein ID:ENSMUSP00000041964
Original member Current member EBI ENSMUST00000114709.2 ENSMUSP00000110357.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114709.2Link to Ensembl Protein Viewer:ENSMUSP00000110357.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114709Re-query CCDS DB by Protein ID:ENSMUSP00000110357
Original member Current member NCBI NM_001357046.1 NP_001343975.1 Accepted alive Link to Nucleotide Sequence:NM_001357046.1Link to Protein Sequence:NP_001343975.1Re-query CCDS DB by Nucleotide ID:NM_001357046Re-query CCDS DB by Protein ID:NP_001343975Link to BLAST:NP_001343975.1
Original member Current member NCBI NM_001357047.1 NP_001343976.1 Accepted alive Link to Nucleotide Sequence:NM_001357047.1Link to Protein Sequence:NP_001343976.1Re-query CCDS DB by Nucleotide ID:NM_001357047Re-query CCDS DB by Protein ID:NP_001343976Link to BLAST:NP_001343976.1
Original member Current member NCBI NM_001357048.1 NP_001343977.1 Accepted alive Link to Nucleotide Sequence:NM_001357048.1Link to Protein Sequence:NP_001343977.1Re-query CCDS DB by Nucleotide ID:NM_001357048Re-query CCDS DB by Protein ID:NP_001343977Link to BLAST:NP_001343977.1
Original member Current member NCBI NM_144558.4 NP_653141.3 Accepted alive Link to Nucleotide Sequence:NM_144558.4Link to Protein Sequence:NP_653141.3Re-query CCDS DB by Nucleotide ID:NM_144558Re-query CCDS DB by Protein ID:NP_653141Link to BLAST:NP_653141.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343975.1 502 Q8CBX9 502 100% 0 0
NP_001343976.1 502 Q8CBX9 502 100% 0 0
NP_001343977.1 502 Q8CBX9 502 100% 0 0
NP_653141.3 502 Q8CBX9 502 100% 0 0

Chromosomal Locations for CCDS 14930.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44126392 44126866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44127638 44127764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44128728 44128823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44129260 44129364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44129583 44129677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44136984 44137116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44138573 44138659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44141778 44141874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44142849 44143142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGCCTAACGCCACTGAAGCTGGAAAAGCCACTGATCCTGGACATGGTGAGCACACATCTGAGAACAAGT
CACCAGAAGAGGGTCTACAAGGTGCTGTACCATCTTTCTATACAAGTGCCTCAGAAGCACCCATAGCGCC
CAGAGGAGATGGGCATTATCCATCGAGTTGTCCAGTGACTCACACTCGAGAGAAAATTTATGCGATCTGC
TCAGATTATGCCTTCCTCAACCAGGCAACATCAGTCTACAAAACTCCTAGCCTAACCCGCTCTGCTTGCC
TCCCTGATAACACCTCTCTTTCTGCTGGAAATACTACAAGATATATTGGAATTTCAACTAGTACATCAGA
AATAATCTATAATGAAGAAAATAACTTGGAAAACTTGTCCACTGGCATGGGCAAGCTACCTCTTGCATGG
GAGATTGATAAATCTGAATTTGATGGGGTGACTACAAATTTGATACATAAGTCAGGCAATGTAAAGAAAC
AATTTTCCAAGAAGAAAACGTCGGATAAAAAAGGGCGGCATCAGAGGGAGTGTCTCCACTATTCTCCTCT
TGATGATGTTAAACAACGCAAAGTGTTAGACCTTAGGCGATGGTACTGCATAAGCCGACCACAGTACAAG
ACTTCATGTGGTATCTCCTCATTGATTTCTTGTTGGAATTTCTTATACAGCATAATGGGAGCTGGGAATC
TCCCACCTATTACCCAAGAAGAGGCATTACATATTTTGGGCTTCCAACCCCCATTTGAAGATATTAGGTT
TGGCCCTTTCACTGGAAATACAACACTCATGAGATGGTTTAGACAAATTAATGACCACTTTCATGTGAAA
GGATGCTCTTATGTTCTATATAAGCCCCATGGGAAGAACAAAACAGCTGGAGAAACTGCTCCAGGGGCCT
TATCAAAGTTGACCCGAGGATTGAAAGATGAGTCACTGGCTTATATCTATCATTGCCAAAATCACTATTT
CTGTCCAATTGGCTTTGAAGCAACCCCTGTGAAAGCTAATAAAGCATTCAGCAGGGGGCCCCTCTCTTCA
CAAGAAGTAGAATACTGGATTTTAATTGGAGAGTCAAGTAGAAAACATCCTGCCATTCACTGTAAAAGAT
GGGCAGATATTGTCACTGATCTAAACACTCAAAATCCAGAATTCTTAGATATCCGACATCTAGAGAGGGG
GCTGCAGTTCCGGAAAACAAAGAAGGTTGGAGGAAATTTGCATTGCATCATAGCATTCCAGAGACTCAGT
TGGCAGAGATTTGGCTTTTGGAACTTTCCATTTGGAACCATTACACAAGAATCACAACATCCCACACATG
TCCCGGGAATTGCCAAATCTGAGAGTGAGGACAATATCTCTAAGAAGCAGCATGGGCGCCTGGGCAGGTC
CTTCAGTGCGAGTTTCCATCAGGACTCGGCATGGAAGAACATGTCTAGCATCCACGAGAGGAGGAACAGT
GGCTACCACAGCTTTAGAGATTATAATGGCAATGACTGA

Translation (502 aa):
MPNATEAGKATDPGHGEHTSENKSPEEGLQGAVPSFYTSASEAPIAPRGDGHYPSSCPVTHTREKIYAIC
SDYAFLNQATSVYKTPSLTRSACLPDNTSLSAGNTTRYIGISTSTSEIIYNEENNLENLSTGMGKLPLAW
EIDKSEFDGVTTNLIHKSGNVKKQFSKKKTSDKKGRHQRECLHYSPLDDVKQRKVLDLRRWYCISRPQYK
TSCGISSLISCWNFLYSIMGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVK
GCSYVLYKPHGKNKTAGETAPGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPLSS
QEVEYWILIGESSRKHPAIHCKRWADIVTDLNTQNPEFLDIRHLERGLQFRKTKKVGGNLHCIIAFQRLS
WQRFGFWNFPFGTITQESQHPTHVPGIAKSESEDNISKKQHGRLGRSFSASFHQDSAWKNMSSIHERRNS
GYHSFRDYNGND


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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