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Report for CCDS52850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52850.1 Public Mus musculus 9 C2cd4a 23 108 98 CCDS HistoryNCBI Gene:244911Re-query CCDS DB by CCDS ID:52850.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52850.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054500.6 ENSMUSP00000058286.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054500.6Link to Ensembl Protein Viewer:ENSMUSP00000058286.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054500Re-query CCDS DB by Protein ID:ENSMUSP00000058286
Original member Current member NCBI NM_001163143.1 NP_001156615.1 Accepted alive Link to Nucleotide Sequence:NM_001163143.1Link to Protein Sequence:NP_001156615.1Re-query CCDS DB by Nucleotide ID:NM_001163143Re-query CCDS DB by Protein ID:NP_001156615Link to BLAST:NP_001156615.1

Chromosomal Locations for CCDS 52850.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 67830755 67831759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGTGGTGTCTGGAGCGGCTCTTGCGGGACCGAGATGGGTTTCTCCCGGGGCGCGTCCACCGCTCCAAAG
CTCGCTCATCCGCTGCGTGCGCAAACGTGCTCACTCCAGACCGCATCCCAGAGTTCTTCATCCCGCCGAG
GCTGGAACCTAGCACGGCCTGGGCTGCGCTGCGCGAAGCCTGGGCTGCAGACACGGAGGCCGACGACGGC
GCGGGCCGCACAGACTGGGACCCGCGCTCCCAGGCTGCGCTCTCGCTGCCGCACCTACCCCGCGCGCGCA
CCGCTTACGGCTTCTGCGCGCTGCTCGAGAGCCCGCACACGCGCCGAAAGGAGTCGCTCTTCCTCGGCCA
CCCAGGTGTCCCGGTCCGCCGGCCTGGGCTTCGCCACCGCACGCACACCTACGCGAGCCCCCGCCGAGTC
CCGGACGCTCCGCGCCCTGCCCCGGGCGACCCAGACGCTGCCCGGGTCCCGACGCCCACTCCTGCTCCCA
GCAGACGCCGCCTCCTACGCTCCCCGGGCAAGCTGCTGAGCCGCGCACTTCGAGCCCCTCGACGTCTGGC
CAGCGCGCGCCCCCCGTGCCGCGGCGACGAGCACGAGCGCGCCGCCTCCTGCGCGCCCCCGGTCCCCAGC
AGCCCGGATCCCGAGCGCCTGCAAGCTGAAGCCAGCGTGGCTCTGGGCCGCGGGGGTTGCACGCTGCGCC
TGGCGGCCGAATACTGTCCGCGCAGCGCCTGCCTCCGCCTCCGCCTGCTGCGCGCTGAGGGCCCGGCCGC
CGCGCTGGAACCCCGCGCCCTGGGCTGCCGCCTCAGCCTGGTGCTGAGGCCGTCGGGCCAGCAGCGTGCC
AGTGTGGTCCGCCGCAGCCGCAAGGCCGCCCTGGACCAGGACTGCTGCTTTGACCGGCTCCCGGAGGAGC
AGCTGCGCCGCCTGGCCGTGCGCATCAAGGCGGAGAGCAAGGGACGGCGGCTGGGCCAGGGCGAGCTGCT
GCTGGGCTCTCTGCTACTGCTATGA

Translation (334 aa):
MWCLERLLRDRDGFLPGRVHRSKARSSAACANVLTPDRIPEFFIPPRLEPSTAWAALREAWAADTEADDG
AGRTDWDPRSQAALSLPHLPRARTAYGFCALLESPHTRRKESLFLGHPGVPVRRPGLRHRTHTYASPRRV
PDAPRPAPGDPDAARVPTPTPAPSRRRLLRSPGKLLSRALRAPRRLASARPPCRGDEHERAASCAPPVPS
SPDPERLQAEASVALGRGGCTLRLAAEYCPRSACLRLRLLRAEGPAAALEPRALGCRLSLVLRPSGQQRA
SVVRRSRKAALDQDCCFDRLPEEQLRRLAVRIKAESKGRRLGQGELLLGSLLLL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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