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Report for CCDS41014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41014.1 Public Mus musculus X Arhgap4 23 108 98 CCDS HistoryNCBI Gene:171207Re-query CCDS DB by CCDS ID:41014.1Re-query CCDS DB by GeneID:171207See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41014.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064376.12 ENSMUSP00000067477.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064376.12Link to Ensembl Protein Viewer:ENSMUSP00000067477.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064376Re-query CCDS DB by Protein ID:ENSMUSP00000067477
Original member Current member NCBI NM_138630.2 NP_619536.2 Accepted alive Link to Nucleotide Sequence:NM_138630.2Link to Protein Sequence:NP_619536.2Re-query CCDS DB by Nucleotide ID:NM_138630Re-query CCDS DB by Protein ID:NP_619536Link to BLAST:NP_619536.2

Chromosomal Locations for CCDS 41014.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73894736 73894963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73895948 73896047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73896394 73896486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73896814 73896997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73897081 73897154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73897229 73897462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73897553 73897658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73897754 73897888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73897969 73898046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73898132 73898192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73899541 73899643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73899845 73899872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73900099 73900183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73900278 73900469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73900635 73900736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73904248 73904469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73904580 73904708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73905651 73905863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73906157 73906219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73906429 73906591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73906669 73906876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73911163 73911229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2868 nt):
ATGGCGGCGCACGGGAAGTTGCGGCGGGAGCGGGGGCTACAACCTGAGTATGACGCACAGGTCAAAGAGA
TGCGCTGGCAGTTGAGTGAGCAGCTTCATTGCCTGGAGCTTCAGGGAGAGCTTCGGCGGGATTTGCTGCA
GGAGCTAGCTGAGTTCATGCGGCGCCGGGCGGAGGTAGAACTGGAGTATTCTCGGGGCCTGGACAAGTTG
GCTGAACGCTTTACCAGCCGCAGTGGTCGCCTTGGGGGCAGCAGCCAGGAGCAGCAAAGCTTCCGGAAGG
AGCCGACTCTCCTGTCACCCTTGCACTGCTGGGCTGTGCTGCTGGAACACACTCGGCAGCAGAGTCGGGA
AAGTGCTGCCCTCAGTGAGGTGCTGGCTGGGCCCCTGGCACAGCGCCTAAGTCACATCAGCGAAGATGTG
GGACGTATTGTCAAAAAGAGCAAGGACCTGGTGCAGCAGTTGCAGGCTGAGCTCCTGGAAGTGGTCTCAG
AACTCCAGACAACCAAGAAGATGTACCATGTGTACCACTCAGAGAGCATGAATGCTGAGACTAAACTTCG
GGAAGCGGAGCGGCAAGAGGAGAAGCGGTCAGGCAGGAGTGCCTTATCCACCACCACTACTACTTCTGCC
ACCACCACCACTACTACCACCACCGTTGAGACAGGGCCCCACCGAAAGAGCTCTCTCAAGAAAGGAGGGC
GGCTAGTGGAGAAGCGTCAGGCCAAGTACTTGGAGCATAAACTTAAGTGCACCAAGGCCCGAAATGAGTA
CCTGCTCAGCCTGGCCAGTGTCAATGCCGCCATCAGCAACTACTACTTACACGATATCTTGGATCTCATG
GATTGCTGTGACACAGGTTTCCATTTGGCCCTGGAGCAGGCCCTCCGGAGCTACACAGCTGCTGAGAGCC
GTACCCAAACCTCCCAGATGCAGGGCTTAGGCAGCCTGGAAGAGGCTCTGGAGGCTTTGGATCCTCCAGG
GGACAAGGCCAAGGTGCTTGAGGTTCATGCCATGGCCTTCTGTCCCCCTCTACGTTTTGAATACCAGCCC
CATGAAGATGATGAGGTGGCCGAGGTCCTGATTGAGATGGAACTGTGGGATGAGATTTTGCCCAGAGCTC
AAAACATTCAGAGTCGCCTGGACCAAAAGACCATCGAGACAGAAGAGGTGAATAAGACACTGAAGGCAAC
ACTTAAGGCTCTGCTAGAGGCGGTGGCATCAGAGGATGGGGACATACTGGACTCTTTGCAGGCCAGCCCC
TCCACTGAGTCCCTCAAGTCTACAAGCTCGGACCCAGGCACCCGACAGACAGGCCGTAGACGGAACCAGC
AGCAGGAGACAGAAACCTTCTATATTACGAAGCTGCAGGAATATCTGAGTGGCCGGAGCATCCTTTCCAA
GCTGCAGGCCAAGCATGAAAAACTTCAGGAAGCCATACAACAAGGTAACAAGGAAAAGCAAGAGACATCT
CGGACCCAGTGCACAGAGAGAAAATTCCACAAGAGCCATCCCCCCCATCCTAGATTCCAGTATAATCAGA
GACTTTTTGGAGGTGATCTGGAGAAGTTTATCCAGAGCTCAGGCCAACCTGTGCCCCTTGTGGTGGAGAG
CTGTATTCGCTTCATTAATCTCAATGGCCTGCAACATGAAGGCATTTTCCGGGTATCAGGTGCCCAGGCC
AGGATCTCAGAGATCCGAGATGCCTTTGAAAGAGGGGAGGACCCTCTGGAGAAAGGCTGTACTGTCCATG
ACCTAGACTCAGTGGCTGGGGTACTAAAGCTGTACTTTCGGAGCCTGGAGCCCCCACTCTTCCCCTTGGA
CATGTTTAATGAGCTGCTGGCTTCAGCAGAACTGGAAGTTGTGGGTGAGCGAGTAGAGCCTGTGAGCCAT
CTGCTATTCAAACTACCCAGACCTGTGCTAGTGGTCCTACGCTATCTCTTCACCTTCCTCAACCACCTGG
CCCAGTACAGTGATGAGAACATGATGGACTCCTACAACCTGGCTGTATGTTTTGGGCCTACACTGTTGCC
TGTGCCTGCTGGGCAAGACCCAGTAGCCTTGCAAGGCCGAGTGAACCAGCTGGTCCAGACCCTTATCCTG
CAACCAGCACGGATTTTCCCACCTCCAGCCATGCTGCCAGGCCCCATCTATGAGAAATGCATGGCACCAC
CTTCTGCCAGCTGCCTGGGGGATGGCCAGTTGGAGAGCCTCATTGGGGAGCCAGAGCTGGAGTTGAAAAC
TGGGACCACAGCTCAGGAGGATGACCAGGAGGGAGTTTTGGAGGCTGTGGCCTGCTTTGCCTACACTGGT
CGTACGGCCCAGGAGCTGACATTCCAGCGAGGGGATGTGCTGCGATTGTATGCTCGGGCATCAAGTGACT
GGTGGCGAGGGGAGCATGCTGGTGTGCAGGGGCTCATTCCCCATAAGTACATCACACTTTGTGAGGGGGA
TGAGAAGCAGATGGCTGGTTCAGGACTACAGGCCATGGGGGAATCTGTGAGCCATCCAGAGGGCTTCCTG
ACGTTGGAGTTTGCCAACCGGTTGGAACTAGGCACCCCACCTGAGGCTTTGGGCCCCTCTAGGCACAGAC
GACCCTGTTTAGTCCCTACCTCCCCTGAAGGACATGTGGAAATGGATAAGGCTGTGGCACAGAACATGAA
TTCTGTGTTTAAGGAGCTCTTGGGAAAGACTGCTGTCCGCCAGGGCCATGGGTTAGCATCTACAGCCTCC
CCGAGTCTAGGAACTCTGACGCCCCTGGCCTGCAGCAGCATCAGCAAAAACAAAGTCTTCTCCCGGGGAC
CTGGGGCTCCAATTTCCCCCTCAACCTCCCATCCCCAGGGTCCAGATTCAACTCGCAAGCCAGTCTGA

Translation (955 aa):
MAAHGKLRRERGLQPEYDAQVKEMRWQLSEQLHCLELQGELRRDLLQELAEFMRRRAEVELEYSRGLDKL
AERFTSRSGRLGGSSQEQQSFRKEPTLLSPLHCWAVLLEHTRQQSRESAALSEVLAGPLAQRLSHISEDV
GRIVKKSKDLVQQLQAELLEVVSELQTTKKMYHVYHSESMNAETKLREAERQEEKRSGRSALSTTTTTSA
TTTTTTTTVETGPHRKSSLKKGGRLVEKRQAKYLEHKLKCTKARNEYLLSLASVNAAISNYYLHDILDLM
DCCDTGFHLALEQALRSYTAAESRTQTSQMQGLGSLEEALEALDPPGDKAKVLEVHAMAFCPPLRFEYQP
HEDDEVAEVLIEMELWDEILPRAQNIQSRLDQKTIETEEVNKTLKATLKALLEAVASEDGDILDSLQASP
STESLKSTSSDPGTRQTGRRRNQQQETETFYITKLQEYLSGRSILSKLQAKHEKLQEAIQQGNKEKQETS
RTQCTERKFHKSHPPHPRFQYNQRLFGGDLEKFIQSSGQPVPLVVESCIRFINLNGLQHEGIFRVSGAQA
RISEIRDAFERGEDPLEKGCTVHDLDSVAGVLKLYFRSLEPPLFPLDMFNELLASAELEVVGERVEPVSH
LLFKLPRPVLVVLRYLFTFLNHLAQYSDENMMDSYNLAVCFGPTLLPVPAGQDPVALQGRVNQLVQTLIL
QPARIFPPPAMLPGPIYEKCMAPPSASCLGDGQLESLIGEPELELKTGTTAQEDDQEGVLEAVACFAYTG
RTAQELTFQRGDVLRLYARASSDWWRGEHAGVQGLIPHKYITLCEGDEKQMAGSGLQAMGESVSHPEGFL
TLEFANRLELGTPPEALGPSRHRRPCLVPTSPEGHVEMDKAVAQNMNSVFKELLGKTAVRQGHGLASTAS
PSLGTLTPLACSSISKNKVFSRGPGAPISPSTSHPQGPDSTRKPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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