CCDS Report for Consensus CDS

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Report for CCDS38758.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
38758.1	Public	Mus musculus	4	Gabbr2	23	108	98

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38758.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000107749.3	ENSMUSP00000103378.2	Accepted	alive
		NCBI	NM_001081141.2	NP_001074610.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001074610.1	940	Q80T41	940	100%	0	0

Chromosomal Locations for CCDS 38758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)

Genome Browser links:

Chromosome	Start	Stop
4	46664784	46664949
4	46667487	46667604
4	46674447	46674576
4	46677470	46677652
4	46681104	46681328
4	46684272	46684382
4	46718786	46718908
4	46724284	46724391
4	46734058	46734190
4	46736354	46736504
4	46739794	46739874
4	46749522	46749582
4	46787429	46787665
4	46798477	46798677
4	46804059	46804124
4	46815638	46815739
4	46846281	46846451
4	46875665	46875802
4	46991108	46991425

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2823 nt):
ATGGCTTCCCCGCCGAGCTCCGGGCAGCCCCGGCCGCCGCCGCCACCGCCGCCGCCCGCGCGCCTGCTGC TGCCCCTGCTGCTGTCGTTGCTGCTGTCGTTGGCTCCCGGGGCCTGGGGCTGGGCGCGGGGCGCCCCCCG GCCGCCGCCCAGCAGCCCGCCGCTCTCCATCATGGGCCTCATGCCGCTCACCAAGGAGGTGGCCAAGGGC AGCATCGGGCGCGGCGTGCTCCCCGCCGTGGAGCTAGCCATCGAGCAGATCCGCAACGAGTCACTCCTGC GCCCCTACTTCCTGGACCTGCGACTCTACGACACCGAGTGTGACAATGCAAAGGGACTGAAAGCCTTCTA TGATGCAATAAAGTATGGGCCGAACCATTTGATGGTGTTTGGAGGCGTCTGTCCGTCTGTCACCTCTATC ATCGCGGAATCCCTCCAAGGCTGGAACCTGGTGCAGCTTTCCTTCGCCGCCACCACGCCTGTTCTTGCGG ATAAGAAGAAGTACCCATATTTCTTCCGGACGGTGCCCTCAGACAACGCGGTGAACCCGGCAATCCTGAA GCTGCTGAAGCACTTCCGCTGGCGGCGCGTGGGCACACTCACGCAGGACGTGCAGCGCTTCTCCGAGGTG AGGAACGACCTGACTGGGGTTCTGTACGGGGAAGACATTGAGATCTCAGACACGGAGAGCTTCTCCAATG ATCCCTGCACCAGCGTCAAAAAGCTCAAGGGGAACGACGTGCGGATCATCCTTGGCCAGTTTGACCAGAA CATGGCAGCGAAAGTCTTCTGTTGTGCCTTTGAGGAGAGCATGTTTGGCAGCAAGTACCAGTGGATCATC CCGGGCTGGTACGAGCCTGCGTGGTGGGAACAGGTGCACGTGGAGGCCAACTCCTCACGCTGCCTGCGCA GGAGCCTCCTGGCTGCCATGGAAGGCTACATCGGAGTGGACTTCGAGCCCCTGAGCTCCAAACAAATCAA GACCATCTCAGGGAAGACTCCACAGCAATACGAAAGAGAATACAACAGCAAGCGTTCGGGTGTAGGGCCC AGCAAGTTCCATGGGTATGCCTACGATGGCATCTGGGTCATCGCCAAGACCCTGCAGAGGGCCATGGAGA CACTGCATGCCAGTAGCAGGCACCAGCGGATCCAGGACTTCAACTACACAGACCACACCCTGGGCAGAAT CATCCTCAACGCCATGAACGAAACCAACTTCTTCGGAGTCACGGGTCAAGTTGTGTTCCGGAACGGGGAA AGAATGGGAACCATTAAATTTACTCAATTTCAAGACAGCAGAGAGGTGAAGGTCGGCGAGTACAACGCTG TGGCTGACACACTGGAGATCATCAACGACACCATAAGGTTCCAGGGGTCGGAGCCACCCAAGGACAAGAC CATCATTCTAGAGCAGCTTCGGAAGATCTCGCTTCCACTGTATAGCATCCTGTCAGCTCTCACTATCCTC GGCATGATCATGGCCAGCGCCTTCCTCTTCTTCAACATCAAGAACCGGAACCAAAAGCTGATCAAGATGT CAAGCCCCTATATGAACAACCTCATCATCCTGGGTGGGATGCTGTCCTATGCATCCATCTTCCTCTTTGG TCTCGATGGATCCTTCGTCTCAGAAAAGACCTTTGAAACACTCTGCACGGTCCGGACCTGGATTCTCACC GTGGGCTACACAACCGCCTTTGGAGCCATGTTTGCAAAGACCTGGAGGGTCCATGCCATCTTCAAAAATG TGAAAATGAAGAAGAAGATCATCAAAGACCAGAAGCTGCTCGTGATTGTGGGGGGCATGCTGCTGATCGA TCTGTGCATCCTGATCTGCTGGCAGGCTGTGGACCCCCTGCGGAGGACAGTGGAGCGGTACAGCATGGAG CCGGACCCAGCAGGACGGGACATCTCCATCCGCCCACTGCTGGAACACTGCGAAAACACCCACATGACCA TCTGGCTCGGCATTGTCTACGCCTACAAGGGGCTCCTCATGTTGTTCGGTTGTTTCTTAGCATGGGAAAC CCGCAACGTGAGCATCCCTGCCCTCAACGACAGCAAGTACATTGGGATGAGTGTGTACAATGTGGGGATC ATGTGCATCATCGGGGCCGCCGTCTCCTTCCTGACACGTGACCAGCCCAACGTGCAGTTCTGCATCGTGG CCCTGGTCATCATCTTCTGTAGCACCATCACTCTCTGCCTGGTGTTTGTGCCAAAGCTCATCACTCTGAG GACAAACCCTGACGCAGCCACTCAGAACAGGCGATTCCAGTTCACACAGAACCAGAAGAAAGAAGATTCG AAGACCTCCACCTCAGTCACCAGCGTGAACCAGGCGAGCACGTCACGCCTGGAGGGACTGCAGTCAGAAA ACCACCGCCTACGAATGAAGATCACAGAGCTGGACAAAGACTTGGAAGAAGTCACCATGCAGCTACAAGA CACACCAGAGAAGACCACATACATCAAACAGAATCACTACCAAGAGCTCAACGACATCCTCAGCTTGGGC AACTTCACAGAGAGCACAGATGGAGGAAAGGCCATTCTAAAAAATCACCTCGATCAAAACCCTCAGCTCC AGTGGAACACGACCGAGCCCTCAAGAACATGCAAAGACCCCATAGAGGACATCAACTCCCCAGAGCACAT CCAGCGCCGGCTGTCCCTCCAGCTCCCCATCCTCCACCACGCCTACCTCCCGTCCATTGGAGGCGTGGAC GCCAGCTGCGTCAGCCCCTGTGTCAGCCCTACAGCCAGCCCTCGCCACAGACACGTACCACCCTCCTTCC GAGTCATGGTCTCGGGCCTGTAG
Translation (940 aa):
MASPPSSGQPRPPPPPPPPARLLLPLLLSLLLSLAPGAWGWARGAPRPPPSSPPLSIMGLMPLTKEVAKG SIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSI IAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHFRWRRVGTLTQDVQRFSEV RNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAFEESMFGSKYQWII PGWYEPAWWEQVHVEANSSRCLRRSLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNSKRSGVGP SKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGE RMGTIKFTQFQDSREVKVGEYNAVADTLEIINDTIRFQGSEPPKDKTIILEQLRKISLPLYSILSALTIL GMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILT VGYTTAFGAMFAKTWRVHAIFKNVKMKKKIIKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVERYSME PDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGI MCIIGAAVSFLTRDQPNVQFCIVALVIIFCSTITLCLVFVPKLITLRTNPDAATQNRRFQFTQNQKKEDS KTSTSVTSVNQASTSRLEGLQSENHRLRMKITELDKDLEEVTMQLQDTPEKTTYIKQNHYQELNDILSLG NFTESTDGGKAILKNHLDQNPQLQWNTTEPSRTCKDPIEDINSPEHIQRRLSLQLPILHHAYLPSIGGVD ASCVSPCVSPTASPRHRHVPPSFRVMVSGL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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