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Report for CCDS48593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48593.1 Public Mus musculus 10 Phyhipl 23 108 98 CCDS HistoryNCBI Gene:70911Re-query CCDS DB by CCDS ID:48593.1Re-query CCDS DB by GeneID:70911See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162251.7 ENSMUSP00000125179.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162251.7Link to Ensembl Protein Viewer:ENSMUSP00000125179.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162251Re-query CCDS DB by Protein ID:ENSMUSP00000125179
Original member Current member NCBI NM_001162846.1 NP_001156318.1 Accepted alive Link to Nucleotide Sequence:NM_001162846.1Link to Protein Sequence:NP_001156318.1Re-query CCDS DB by Nucleotide ID:NM_001162846Re-query CCDS DB by Protein ID:NP_001156318Link to BLAST:NP_001156318.1

Chromosomal Locations for CCDS 48593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70559247 70559781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70565174 70565291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70568902 70569076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70570823 70570987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGAAGAGCTACCTGTCCCACATAACATCAAAATAAATAACATCACATGTGACTCCTTCAAGATCTCAT
GGGATATGGACTCCAAGTCGAAGGACCGCATCACGCACTACTTCATTGACCTCAACAAGAAAGAGAACAA
GAACTCGAACAAGTTTAAACACAAGGATGTTCCAACAAAATTGGTGGCCAAAGCTGTTCCTTTGCCAATG
ACTGTTCGTGGACACTGGTTTTTGAGCCCAAGGACTGAGTATACAGTAGCGGTACAGACTGCCTCAAAAC
AGGTTGATGGTGATTACGTCGTGTCTGAATGGAGTGAGATTATAGAATTCTGTACAGCAGATTACTCCAA
AGTTCATCTAACACAGCTGCTGGAGAAGGCTGACGTGATTGCAGGACGCATGCTTAAGTTCTCTGTTTTC
TATCGGAACCAGCACAAAGAGTATTTTGACTATGTGAGAGAACACTATGGGAATGCTATGCAGCCTTCCA
TCAAGGATAACAGTGGTAGCCATGGCTCACCCATCAGTGGGAAACTGGAAGGCATCTTCTTCAGCTGCAG
CACTGAGTTCAATACAGGGAAGCCACCCCAGGATTCACCATATGGAAGATACAGGTTTGAGATTGCAGCA
GAAAAACTTTTCAACCCCAATACTAACTTATACTTTGGGGACTTCTACTGTATGTACACGGCTTATCATT
ATGTGATTCTTGTCATTGCCCCTGTGGGATCACCAGGAGATGAATTTTGTAAGCAGCGCCTTCCTCAACT
AAATTCCAAGGATAATAATTTTTTGACCTGTACAGAAGAAGATGGGGTGCTGGTGTACCACCACGCCCAG
GATGTCATTTTAGAAGTCATTTACACTGACCCTGTGGCTCTTTCCCTGGGCACCGTGGCAGAAATCACTG
GTCATCAGCTCATGAGTTTGTCTACTGCAAATGCAAAGAAAGACCCCAGCTGCAAAACCTGTAACATCAG
TGTCGGACGCTAA

Translation (330 aa):
MEELPVPHNIKINNITCDSFKISWDMDSKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPM
TVRGHWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKADVIAGRMLKFSVF
YRNQHKEYFDYVREHYGNAMQPSIKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAA
EKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNNFLTCTEEDGVLVYHHAQ
DVILEVIYTDPVALSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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