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Report for CCDS17947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17947.1 Public Mus musculus 4 Bpnt2 23 108 98 CCDS HistoryNCBI Gene:242291Re-query CCDS DB by CCDS ID:17947.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084949.2 ENSMUSP00000082013.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084949.2Link to Ensembl Protein Viewer:ENSMUSP00000082013.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084949Re-query CCDS DB by Protein ID:ENSMUSP00000082013
Original member Current member NCBI NM_177730.4 NP_808398.1 Accepted alive Link to Nucleotide Sequence:NM_177730.4Link to Protein Sequence:NP_808398.1Re-query CCDS DB by Nucleotide ID:NM_177730Re-query CCDS DB by Protein ID:NP_808398Link to BLAST:NP_808398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808398.1 356 Q80V26 356 100% 0 0

Chromosomal Locations for CCDS 17947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 4767704 4767972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4769312 4769473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4776314 4776409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4778193 4778355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4792723 4793103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGCCCCCATGGGCATCCGCCTGTCCCCGCTGGGGGTGGCCGTATTTTTCCTGCTGGGGCTCGGGGTGC
TCTACCACCTCTACTCGGGCTTCCTGGCCGGCCGCTTCAGCCTCTTCGGCCTGGGCAGCGAGCCGGCGGC
AGGGGAGGCCGAGGTGGCGTCCGACGGGGGCACGGTGGACCTGCGCGAGATGCTGGCCGTGGCCGTGCTG
GCGGCCGAGCGCGGCGGCGACGAGGTGAGGCGGGTCCGCGAGAGCAATGTCCTTCACGAGAAGTCCAAGG
GGAAGACGCGCGAGGGCGCCGATGATAAGATGACCAGCGGCGACGTACTGTCCAACCGCAAGATGTTCTA
CCTGCTCAAGACGGCCTTCCCCAACGTGCAGATAAATACTGAGGAACATGTGGATGCCTCTGACAAGGAG
GTCATTGTATGGAACCGGAAGATTCCTGAGGACATCCTGAAGGAAATCGCTGCTCCTAAGGAGGTACCAG
CAGAAAGTGTGACAGTTTGGATTGACCCACTTGATGCTACACAGGAATACACAGAGGATCTTCGAAAGTA
TGTCACTACCATGGTGTGTGTAGCTGTGAATGGCAAACCTGTGTTAGGAGTTATTCATAAGCCATTTTCT
GAATATACAGCTTGGGCAATGGTAGATGGTGGTTCAAATGTGAAAGCCCGTTCTTCCTACAATGAGAAGA
CCCCAAAGATCATTGTGTCTCGCTCTCATGCAGGAATGGTCAAACAGGTTGCTCTTCAGACGTTTGGAAA
CCAGACTTCAATTATCCCAGCTGGGGGTGCTGGTTATAAAGTTTTAGCACTCTTGGATGTGCCTGATATG
ACTCAAGAAAAAGCAGATCTATATATTCATGTGACATACATCAAAAAGTGGGATATATGTGCTGGCAATG
CCATCTTAAAAGCCCTTGGTGGCCATATGACCACTCTGAATGGAGAAGAGATCAGTTACACTGGGTCTGA
TGGCATTGAAGGGGGACTTCTTGCTAGCATCAGAATGAACCACCAAGCTCTGGTCAGAAAACTTCCGGAT
TTAGAAAAGTCAGGACATTAG

Translation (356 aa):
MAPMGIRLSPLGVAVFFLLGLGVLYHLYSGFLAGRFSLFGLGSEPAAGEAEVASDGGTVDLREMLAVAVL
AAERGGDEVRRVRESNVLHEKSKGKTREGADDKMTSGDVLSNRKMFYLLKTAFPNVQINTEEHVDASDKE
VIVWNRKIPEDILKEIAAPKEVPAESVTVWIDPLDATQEYTEDLRKYVTTMVCVAVNGKPVLGVIHKPFS
EYTAWAMVDGGSNVKARSSYNEKTPKIIVSRSHAGMVKQVALQTFGNQTSIIPAGGAGYKVLALLDVPDM
TQEKADLYIHVTYIKKWDICAGNAILKALGGHMTTLNGEEISYTGSDGIEGGLLASIRMNHQALVRKLPD
LEKSGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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