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Report for CCDS16731.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16731.2 Public Mus musculus 2 Stk35 23 108 98 CCDS HistoryNCBI Gene:67333Re-query CCDS DB by CCDS ID:16731.2Re-query CCDS DB by GeneID:67333See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16731.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 137 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16731.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166282.2 ENSMUSP00000132862.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166282.2Link to Ensembl Protein Viewer:ENSMUSP00000132862.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166282Re-query CCDS DB by Protein ID:ENSMUSP00000132862
Original member Current member NCBI NM_001038635.2 NP_001033724.2 Accepted alive Link to Nucleotide Sequence:NM_001038635.2Link to Protein Sequence:NP_001033724.2Re-query CCDS DB by Nucleotide ID:NM_001038635Re-query CCDS DB by Protein ID:NP_001033724Link to BLAST:NP_001033724.2

Chromosomal Locations for CCDS 16731.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 129800541 129800846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129801404 129802004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129827774 129827850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGGCCACCAGGAATCTCCGCTGACCAGAGCGGCGGCGGGAGGTGCAGCTTACATAAAGAGGTTACGTA
AAGTGCTCAGCTGGCGTGAACTCGGGGACGGCCACGGGAACCTGGAAGCCGAGGCCTCCCCCGGGAGCGT
TGCTGTCATCACAAGAGCAGCGCCGCGACGCGCTACACGCTCAGCCAGGCTCCCCGCCTCGCGCCCTACC
CGGCTCTGCAGACAAGCCCGGCTCGGAACGGACCATCCTCCGGCGCGGGCTCCAAGGGGGAACCGGTTCG
CCCGGAAGAGGAACAGCGCCGGCCAGATCACCATCCAAGGTCCCGCTCCTCCACATCTCGGGGCTAGACG
GAGGGATGAGGCAAGGGGGGCCCGGGCGGCGCCGTTGCTGCTCCCCCCGCCCCCCGCAGCCATGGAAACG
GGGAAAGAGAACGGAGCCCGCAGAGGGACAAAAAGCCCGGAGCGGAAAAGGCGAAGCCCAGTCCAGCGGG
TACTGTGCGAGAAGCTGAGGCCGGCGGCCCAGGCCATGGATCCGGCTGGGGCCGAGGTCCCGGGCGAGGC
CTTCCTGGCCCGGCGGCGGCCGGATGGCGGCGGCGGGGATGTTCCTGCACGGCCGCGCTACAGCCTCTTG
GCGGAGATCGGGCGCGGCAGCTACGGCGTGGTTTATGAGGCTGTGGCTGGGCGCAGTGGGGCCAGGGTGG
CAGTCAAGAAGATCCGCTGCGACGCTCCCGAGAACGTGGAGTTGGCACTAGCAGAATTCTGGGCCCTCAC
CAGTCTCAAGCGGCGGCACCAGAATATCGTGCAGTTTGAGGAGTGCGTCCTACAGCGCAACGGGTTAGCC
CAGCGCATGAGTCACGGCAACAAGAACTCACAGCTTTACCTGCGCCTGGTGGAGACCTCGCTCAAAGGTC
GATCCTTCGGGACCCACAGTCTCATCGTGTCTCGGACAGGATGGCAGAGGGTACAGGTGGTGGTGATCTC
CTGA

Translation (327 aa):
MGHQESPLTRAAAGGAAYIKRLRKVLSWRELGDGHGNLEAEASPGSVAVITRAAPRRATRSARLPASRPT
RLCRQARLGTDHPPARAPRGNRFARKRNSAGQITIQGPAPPHLGARRRDEARGARAAPLLLPPPPAAMET
GKENGARRGTKSPERKRRSPVQRVLCEKLRPAAQAMDPAGAEVPGEAFLARRRPDGGGGDVPARPRYSLL
AEIGRGSYGVVYEAVAGRSGARVAVKKIRCDAPENVELALAEFWALTSLKRRHQNIVQFEECVLQRNGLA
QRMSHGNKNSQLYLRLVETSLKGRSFGTHSLIVSRTGWQRVQVVVIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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