NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38187.1 Public Mus musculus 2 Ldlrad3 23 108 98 CCDS HistoryNCBI Gene:241576Re-query CCDS DB by CCDS ID:38187.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058790.11 ENSMUSP00000054134.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058790.11Link to Ensembl Protein Viewer:ENSMUSP00000054134.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000058790Re-query CCDS DB by Protein ID:ENSMUSP00000054134
Original member Current member NCBI NM_178886.3 NP_849217.2 Accepted alive Link to Nucleotide Sequence:NM_178886.3Link to Protein Sequence:NP_849217.2Re-query CCDS DB by Nucleotide ID:NM_178886Re-query CCDS DB by Protein ID:NP_849217Link to BLAST:NP_849217.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849217.2 345 A2AR95-1 345 100% 0 0

Chromosomal Locations for CCDS 38187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 101952938 101953175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101954829 101955174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102057907 102058041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102069933 102070058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102113533 102113679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102186280 102186325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGTGGCTGCTGGGGCCGCTGTGCCTGCTGCTGAGCAGCACTGCGGAGAGCCAGCTGCTCCCTGGGAACA
ACTTCACCAACGAGTGCAACATCCCAGGTAACTTCATGTGCAGCAACGGGCGGTGCATCCCGGGCGCCTG
GCAGTGTGACGGGCTGCCTGACTGCTTCGACAAGAGTGACGAGAAGGAATGCCCCAAAGCAAAATCAAAA
TGTGGCCCGACCTTCTTCCCCTGCGCCAGTGGCATCCACTGTATCATCGGCCGCTTCCGCTGCAATGGAT
TTGAGGACTGTCCCGACGGCAGCGACGAGGAGAACTGCACAGCGAACCCCCTGCTTTGCTCCACGGCTCG
CTACCACTGCAGGAACGGCCTGTGCATCGACAAGAGCTTCATCTGCGATGGTCAGAATAACTGTCAAGAC
AACAGTGACGAGGAGAGCTGCGAGAGTTCTCTAGAACCAGGCAGCGGGCAGGTGTTTGTGACCTCGGAGA
ACCAGCTTGTGTACTACCCCAGCATCACGTACGCCATCATCGGCAGCTCTGTCATCTTCGTGCTGGTGGT
GGCCCTGCTCGCACTGGTCCTGCATCATCAGCGAAAGCGAAACAACCTCATGACCCTCCCTGTGCACCGG
CTGCAGCATCCTGTGCTGCTCTCTCGCCTGGTGGTCCTGGACCACCCTCACCACTGCAACGTCACCTACA
ATGTCAATAATGGTGTTCAGTATGTGGCTACCCAGGCTGAACAAAATGCCTCGGAAGTAGGCTCTCCACC
CTCCTATTCAGAGGCCCTGCTGGACCAAAGACCTGCATGGTACGACCTTCCTCCACCACCCTATTCATCT
GACACCGAGTCTCTGAACCAAGCTGACCTGCCTCCTTACCGCTCCCGGTCAGGAAGTGCCTACAGTGCCA
GCTCCCAGGCAGCCAGCAGCCTCCTGAGTGTGGAAGCCAGCAGCCACAACCCAGAGCAGCCTGGCTCTCC
AGAGGGCTCTGCTGAGCCCAGAGACTCTGTGCCCAGTCAGGGCACCGAAGAAGTATAA

Translation (345 aa):
MWLLGPLCLLLSSTAESQLLPGNNFTNECNIPGNFMCSNGRCIPGAWQCDGLPDCFDKSDEKECPKAKSK
CGPTFFPCASGIHCIIGRFRCNGFEDCPDGSDEENCTANPLLCSTARYHCRNGLCIDKSFICDGQNNCQD
NSDEESCESSLEPGSGQVFVTSENQLVYYPSITYAIIGSSVIFVLVVALLALVLHHQRKRNNLMTLPVHR
LQHPVLLSRLVVLDHPHHCNVTYNVNNGVQYVATQAEQNASEVGSPPSYSEALLDQRPAWYDLPPPPYSS
DTESLNQADLPPYRSRSGSAYSASSQAASSLLSVEASSHNPEQPGSPEGSAEPRDSVPSQGTEEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH