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Report for CCDS16157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16157.1 Public Mus musculus 2 Rbm45 23 108 98 CCDS HistoryNCBI Gene:241490Re-query CCDS DB by CCDS ID:16157.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046389.4 ENSMUSP00000040420.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046389.4Link to Ensembl Protein Viewer:ENSMUSP00000040420.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046389Re-query CCDS DB by Protein ID:ENSMUSP00000040420
Original member Current member NCBI NM_153405.2 NP_700454.1 Accepted alive Link to Nucleotide Sequence:NM_153405.2Link to Protein Sequence:NP_700454.1Re-query CCDS DB by Nucleotide ID:NM_153405Re-query CCDS DB by Protein ID:NP_700454Link to BLAST:NP_700454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700454.1 476 Q8BHN5 476 100% 0 0

Chromosomal Locations for CCDS 16157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 76370129 76370428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76372035 76372157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76373560 76373686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76375356 76375478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76376319 76376504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76378381 76378510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76378678 76378762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76378918 76379081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76380365 76380557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGACGACGCCGGCGGCTTGGGAGGCAGCGGAGGATTCCGCCCGGGCGTAGACAGCCTGGATGAGCCGC
CCAACAGCCGCATTTTTCTAGTGATCAGCAAGCACACATCCGAATTGGTGCTGAGGGAGCGCTTCTCGCC
CTTCGGAGACATCCAGGACATCTGGGTGGTGCGCGACAAGCACACTAAGGAGTCCAAGGGCGTGGCCTTC
GTCAAGTTCGCGCGCAGCTCACAGGCCTGCCGGGCAATGGAGGAGATGCACGGACAGTGCCTGGGTCCCA
GCGACACCAAGCCCATCAAGGTTTTCATTGCCCAGTCCCGATCATCAGGAAGTCACAGGGATGTTGAAGA
TGAAGAACTCACGAGAATCTTTGTTATGATACCAAAGTCCTATACAGAAGAAGACCTGCGGGAGAAGTTC
AAGGTGTATGGAGATATCGAGTATTGCAGCATTATTAAGAATAAAGTCACTGGAGAAAGTAAAGGCTTGG
GCTACGTGCGCTATTTAAAACCATCACAAGCTGCCCAGGCAATAGAAAACTGTGATAGAAGTTTCAGAGC
ACTCTTGGCTGAACCTAAAAATAAAGTGTCGGGGTCCCCAGAACAAGATGATTACAGCAGCGGGAGGCAG
GAGGCTTTGGGACAGGAACCCAGAGCAAATCTGTTTCCCTTTGTTGGAGAACAGCAATCTGAATTTTCAA
CTTTTGACAAGAACGATAGCAGAGGCCAAGAAGCTGTCTCCAAACGCCTGTCGGTGGTGTCGAGAGTCCC
CTTCACGGAAGAGCAGCTCTTCAGCATTTTTGACATCGTCCCAGGCCTGGAGTATTGTGAGGTTCCGCGA
GATCCTTATTCAAATTACGGTCATGGTGTGGTTCAGTATTTTAACGTAGCATCAGCTATTTATGCAAAAT
ACAAACTGCATGGGTTCCAGTACCCTCCTGGGAATCGGATAGTCGTCTCTTTCCTGGATGACGGGAGTAA
TATGACAGAACTCATCAGGAAAATGGCGACACAGATGGTGGCGGCCCAGCTCGCGTCGATGGTGTGGAGT
ACCACGAGTCAGCAGCAGTTTCTGCAATATGGAGGAAATGCTGCCTCACAGGCGCCTCAAATCCAGACAG
ATGTTGTACTTCCGTCGTGCAAAAAGAAAGCGCCGCCTGAAACTCCAGTGAAAGAAAGGCTGTTTGTTGT
GTTTAATCCCCATCCTTTGCCACTAGACGTGTTGGAGGATATATTCTGCCGTTTTGGGAACCTGATCGAG
GTCTACCTTGTGTCGGGAAAAAATGTGGGCTATGTCAAGTATGCCGATAGAAAGAGCGCCAATGAGGCCA
TCACAACTCTGCACGGGAAGATTCTGAATGGGGTCAGACTTAAGGTTATGCTGGCAGATTCCCCAAGAGA
AGAATCCAAAAAGAGGCAGAGAACTTACTGA

Translation (476 aa):
MDDAGGLGGSGGFRPGVDSLDEPPNSRIFLVISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAF
VKFARSSQACRAMEEMHGQCLGPSDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSYTEEDLREKF
KVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRALLAEPKNKVSGSPEQDDYSSGRQ
EALGQEPRANLFPFVGEQQSEFSTFDKNDSRGQEAVSKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVPR
DPYSNYGHGVVQYFNVASAIYAKYKLHGFQYPPGNRIVVSFLDDGSNMTELIRKMATQMVAAQLASMVWS
TTSQQQFLQYGGNAASQAPQIQTDVVLPSCKKKAPPETPVKERLFVVFNPHPLPLDVLEDIFCRFGNLIE
VYLVSGKNVGYVKYADRKSANEAITTLHGKILNGVRLKVMLADSPREESKKRQRTY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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