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Report for CCDS35549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35549.1 Public Mus musculus 1 Il18r1 23 108 98 CCDS HistoryNCBI Gene:16182Re-query CCDS DB by CCDS ID:35549.1Re-query CCDS DB by GeneID:16182See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087983.7 ENSMUSP00000085298.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087983.7Link to Ensembl Protein Viewer:ENSMUSP00000085298.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000087983Re-query CCDS DB by Protein ID:ENSMUSP00000085298
Original member Current member EBI ENSMUST00000108044.3 ENSMUSP00000103679.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108044.3Link to Ensembl Protein Viewer:ENSMUSP00000103679.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108044Re-query CCDS DB by Protein ID:ENSMUSP00000103679
Original member Current member EBI ENSMUST00000195684.5 ENSMUSP00000142070.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195684.5Link to Ensembl Protein Viewer:ENSMUSP00000142070.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195684Re-query CCDS DB by Protein ID:ENSMUSP00000142070
Original member Current member NCBI NM_008365.2 NP_032391.1 Accepted alive Link to Nucleotide Sequence:NM_008365.2Link to Protein Sequence:NP_032391.1Re-query CCDS DB by Nucleotide ID:NM_008365Re-query CCDS DB by Protein ID:NP_032391Link to BLAST:NP_032391.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032391.1 537 Q61098 537 100% 0 0

Chromosomal Locations for CCDS 35549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40471757 40471814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40474694 40474940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40478385 40478550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40480922 40481066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40484281 40484343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40486975 40487098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40489601 40489740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40491058 40491216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40495749 40495907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40498338 40498690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGCATCATGAAGAATTAATCTTGACACTCTGCATTCTCATTGTTAAAAGTGCCTCAAAAAGTTGTATTC
ACCGATCACAAATTCATGTGGTAGAGGGAGAACCTTTTTATCTGAAGCCATGTGGCATATCTGCACCAGT
GCACAGGAATGAAACAGCCACCATGAGATGGTTCAAAGGCAGTGCTTCACATGAGTATAGAGAGCTGAAC
AACAGAAGCTCGCCCAGAGTCACTTTTCATGATCACACCTTGGAATTCTGGCCAGTTGAGATGGAGGATG
AGGGAACGTACATTTCTCAAGTCGGAAATGATCGTCGCAATTGGACCTTAAATGTCACCAAAAGAAACAA
ACACAGCTGTTTCTCTGACAAGCTCGTGACAAGCAGAGATGTTGAAGTTAACAAATCTCTGCATATCACT
TGTAAGAATCCTAACTATGAAGAGCTGATCCAGGACACATGGCTGTATAAGAACTGTAAGGAAATATCCA
AAACCCCAAGGATCCTGAAGGATGCCGAGTTTGGAGATGAGGGCTACTACTCCTGCGTGTTTTCTGTCCA
CCATAATGGGACACGGTACAACATCACCAAGACTGTCAATATAACAGTTATTGAAGGAAGGAGTAAAGTA
ACTCCAGCTATTTTAGGACCAAAGTGTGAGAAGGTTGGTGTAGAACTAGGAAAGGATGTGGAGTTGAACT
GCAGTGCTTCATTGAATAAAGACGATCTGTTTTATTGGAGCATCAGGAAAGAGGACAGCTCAGACCCTAA
TGTGCAAGAAGACAGGAAGGAGACGACAACATGGATTTCTGAAGGCAAACTGCATGCTTCAAAAATACTG
AGATTTCAGAAAATTACTGAAAACTATCTCAATGTTTTATATAATTGCACCGTGGCCAACGAAGAAGCCA
TAGACACCAAGAGCTTCGTCTTGGTGAGAAAAGAAATACCTGATATCCCAGGCCATGTCTTTACAGGAGG
AGTAACTGTGCTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTGATTTTGTGTGTCATTTATAAAGTT
GACTTGGTTCTGTTCTATAGGCGCATAGCGGAAAGAGACGAGACACTAACAGATGGTAAAACATATGATG
CCTTTGTGTCTTACCTGAAAGAGTGTCATCCTGAGAATAAAGAAGAGTATACTTTTGCTGTGGAGACGTT
ACCCAGGGTCCTGGAGAAACAGTTTGGGTATAAGTTATGCATATTTGAAAGAGATGTGGTGCCTGGCGGA
GCTGTTGTCGAGGAGATCCATTCACTGATAGAGAAAAGCCGGAGGCTAATCATCGTTCTCAGCCAGAGTT
ACCTGACTAACGGAGCCAGGCGTGAGCTCGAGAGTGGACTCCACGAAGCACTGGTAGAGAGGAAGATTAA
GATCATCTTAATTGAGTTTACTCCAGCCAGCAACATCACCTTTCTCCCCCCGTCGCTGAAACTCCTGAAG
TCCTACAGAGTTCTAAAATGGAGGGCTGACAGTCCCTCCATGAACTCAAGGTTCTGGAAGAATCTTGTTT
ACCTGATGCCCGCAAAAGCCGTCAAGCCATGGAGAGAGGAGTCGGAGGCGCGGTCTGTTCTCTCAGCACC
TTGA

Translation (537 aa):
MHHEELILTLCILIVKSASKSCIHRSQIHVVEGEPFYLKPCGISAPVHRNETATMRWFKGSASHEYRELN
NRSSPRVTFHDHTLEFWPVEMEDEGTYISQVGNDRRNWTLNVTKRNKHSCFSDKLVTSRDVEVNKSLHIT
CKNPNYEELIQDTWLYKNCKEISKTPRILKDAEFGDEGYYSCVFSVHHNGTRYNITKTVNITVIEGRSKV
TPAILGPKCEKVGVELGKDVELNCSASLNKDDLFYWSIRKEDSSDPNVQEDRKETTTWISEGKLHASKIL
RFQKITENYLNVLYNCTVANEEAIDTKSFVLVRKEIPDIPGHVFTGGVTVLVLASVAAVCIVILCVIYKV
DLVLFYRRIAERDETLTDGKTYDAFVSYLKECHPENKEEYTFAVETLPRVLEKQFGYKLCIFERDVVPGG
AVVEEIHSLIEKSRRLIIVLSQSYLTNGARRELESGLHEALVERKIKIILIEFTPASNITFLPPSLKLLK
SYRVLKWRADSPSMNSRFWKNLVYLMPAKAVKPWREESEARSVLSAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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