NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17668.1 Public Mus musculus 3 Hsd3b3 23 108 98 CCDS HistoryNCBI Gene:15494Re-query CCDS DB by CCDS ID:17668.1Re-query CCDS DB by GeneID:15494See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094050.10 ENSMUSP00000091592.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094050.10Link to Ensembl Protein Viewer:ENSMUSP00000091592.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094050Re-query CCDS DB by Protein ID:ENSMUSP00000091592
Original member Current member EBI ENSMUST00000107018.7 ENSMUSP00000102632.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107018.7Link to Ensembl Protein Viewer:ENSMUSP00000102632.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107018Re-query CCDS DB by Protein ID:ENSMUSP00000102632
Original member Current member NCBI NM_001012306.2 NP_001012306.2 Accepted alive Link to Nucleotide Sequence:NM_001012306.2Link to Protein Sequence:NP_001012306.2Re-query CCDS DB by Nucleotide ID:NM_001012306Re-query CCDS DB by Protein ID:NP_001012306Link to BLAST:NP_001012306.2

Chromosomal Locations for CCDS 17668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98741884 98742695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98753311 98753455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGCCTGGGTGGAGCTGCCTGGTGACTGGAGCAGGAGGGTTTTTGGGCCAGAGGATCATCCAGTTGTTGG
TGCAGGAGAAAGATCTTGAGGAGATCAGGGTCCTGGACAAGGTCTTCAAACCTGAAACCAGGGAGCAATT
CTTCAGTACCCAGAACTTATTGGAGGCCTGTATCCAAGCCAGTGTGCCAGCCTTCATCTTCTCCAGCTCA
GTTGACGTTGCAGGGCCCAACTCTTACAAGGACATTGTCCTGAATGGCCACGAGGACGAGCATCGTGAAA
GCACATGGTCTGACCCATACCCATACAGCAAAAAGATGGCTGAGAAGGCAGTGCTGGCAGCCAATGGGAG
CATGCTGAAAAATGGTGGCACTTTGCAAACTTGTGCATTAAGGCCCATGTGCATTTATGGGGAGAGAAGT
CAATTCCTTTCTAACACAATAATTAAGGCCCTCAAAAATAAGTTTATTCTGAGAGGTGGGGGCAAATTCT
CCACAGCCAACCCAGTATATGTGGGCAATGTGGCCTGGGCACACATTCTGGCTGCCAGGGGCCTTCGAAA
CCCCAAGAAGTCACCAAATATCCAAGGAGAGTTCTACTACATCTCAGATGATACCCCTCACCAAAGTTAT
GATGATTTAAATTACACCCTGAGCAAGGAGTGGGGCTTCTGCCTCAATTCCAGGTGGTACCTTCCTGTGC
CCATACTGTACTGGCTTGCCTTCCTGCTGGAAACTGTGAGCTTCCTGCTGAGTCCAATCTACAGATATAT
ACCTCCCTTTAACCGCCACTTGGTCACACTGACAGCTAGTACGTTCACTTTCTCCTACAAGAAAGCTCAG
CGAGATCTGGGCTATGAGCCACTTGTCAGCTGGGAGGAAGCCAAGCAGAAAACCTCAGAGTGGATCGGGA
CACTAGTGGAGCAGCACAGGGAGACACTGGACACAAAGTCTCAGTGA

Translation (318 aa):
MPGWSCLVTGAGGFLGQRIIQLLVQEKDLEEIRVLDKVFKPETREQFFSTQNLLEACIQASVPAFIFSSS
VDVAGPNSYKDIVLNGHEDEHRESTWSDPYPYSKKMAEKAVLAANGSMLKNGGTLQTCALRPMCIYGERS
QFLSNTIIKALKNKFILRGGGKFSTANPVYVGNVAWAHILAARGLRNPKKSPNIQGEFYYISDDTPHQSY
DDLNYTLSKEWGFCLNSRWYLPVPILYWLAFLLETVSFLLSPIYRYIPPFNRHLVTLTASTFTFSYKKAQ
RDLGYEPLVSWEEAKQKTSEWIGTLVEQHRETLDTKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH