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Report for CCDS48621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48621.1 Public Mus musculus 10 Palm 23 108 98 CCDS HistoryNCBI Gene:18483Re-query CCDS DB by CCDS ID:48621.1Re-query CCDS DB by GeneID:18483See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105379.2 ENSMUSP00000101018.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105379.2Link to Ensembl Protein Viewer:ENSMUSP00000101018.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105379Re-query CCDS DB by Protein ID:ENSMUSP00000101018
Original member Current member NCBI NM_001161747.1 NP_001155219.1 Accepted alive Link to Nucleotide Sequence:NM_001161747.1Link to Protein Sequence:NP_001155219.1Re-query CCDS DB by Nucleotide ID:NM_001161747Re-query CCDS DB by Protein ID:NP_001155219Link to BLAST:NP_001155219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155219.1 339 Q9Z0P4-2 339 100% 0 0

Chromosomal Locations for CCDS 48621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79793736 79793740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79806640 79806691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79807034 79807114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79807578 79807708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79809470 79809620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79812343 79812364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79815185 79815241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79819041 79819561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGAGGTCCTGGCAACAGACACGGCGTCCCAGCAGGAGCGGCTTCAAGCCATCGCTGAGAAGCGTAGGA
AGCAGGCAGAGATTGAGAGCAAGCGGAGACAACTGGAGGATGACCGAAGACAGCTGCAGTACCTGAAGTC
CAAGGCACTGAGGGAACGCTGGCTGCTGGAGGGGACACCATCCTCAGCCTCAGAGGGCGACGAGGACATG
AGGAAACAGATGCAGGAGGATGAGCAGAAAGCCCGGGGCCTGGAGGAATCCATCACCAGGCTCGAGAAAG
AGATCGATGTTCTGGAGTTTGGAGAGTCAGCCCCAGCTGCCTCAAAGGAGAATTCAGCAGCCCCCAGCCC
AGGCCGGCCCCAGTCTGCAAGCCCAGCCAAGGAGGAGCAAAAGTCAGAAACCTTGGTGAACGCTCAGCAG
ACTCCGTTGGGTACCCCAAAAGAGAATCGCACGTCCACACCGGTGCGGAGTCCAGGGGGATCCACAATGA
TGAAAGCAGTGGTCCATGCCGTGGACGGCATCGCTGAGAACGGGATCCAGCCTCTAAGTTCCTCCGAGGT
GGACGAACTCATTCACAAGGCCGATGAGGTCACACTGAGCGAGGCAGGGTCCACAGCTGGGCCAGCGGAG
CCTCGGGGACTCGCAGAGGATGTCACCAGGACCACGCCGTCCAGAAGGGAGATCACAGGAGTTGAGGCTC
AACCAGGAGAGGCCACATCAGGCCCACCAGGCATCCAGCCCGGTCAGGAGCCCCCGGTCACCATGGTCTT
CATGGGTTATCAGAACGTGGAAGATGAAGCAGAAACCAAGAAGGTACTGGGCCTGCAGGACACCATCAAG
GCTGAACTGGTGGTGATTGAAGACGCGGCCACGCCCAGGGAGCCCGCACCTCTCAATGGCAGCGCTGCTG
AGCTCCCGGCCACCAAGGAGGAGAACCAGACGGGGCCCACGACCACGCCCAGCGACACCCAGGATCTTGA
CATGAAGAAGCCTCGCTGTAGATGTTGTTCTGTCATGTGA

Translation (339 aa):
MEVLATDTASQQERLQAIAEKRRKQAEIESKRRQLEDDRRQLQYLKSKALRERWLLEGTPSSASEGDEDM
RKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSASPAKEEQKSETLVNAQQ
TPLGTPKENRTSTPVRSPGGSTMMKAVVHAVDGIAENGIQPLSSSEVDELIHKADEVTLSEAGSTAGPAE
PRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMGYQNVEDEAETKKVLGLQDTIK
AELVVIEDAATPREPAPLNGSAAELPATKEENQTGPTTTPSDTQDLDMKKPRCRCCSVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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