CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS49929.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
49929.1 |
Public |
Mus musculus |
17 |
Arid1b |
23 |
108 |
98 |
|
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 49929.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENSMUST00000115797.8 |
ENSMUSP00000111463.2 |
Accepted |
alive |
|
|
|
NCBI |
NM_001085355.1 |
NP_001078824.1 |
Accepted |
alive |
|
Chromosomal Locations for CCDS 49929.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6735 nt): ATGGAGACCGGGCTGCTCCCCAACCACAAACTGAAAGCCGTTGGCGAGGCCCCCGCTGCACCGCCCCATC AGCAGCACCACCACCACCATGCCCACCACCACCACCACCACCATGCCCACCACCTCCACCACCTCCACCA CCACCACGCACTACAGCAGCAGCTAAACCAGTTCCAGCAGCCGCAGCCGCCGCAGCCACAGCAGCAGCAG CCGCCGCCACCGCCGCAGCAGCAGCATCCCACTGCCAACAACAGCCTGGGCGGTGCGGGCGGCGGCGCGC CTCAGCCCGGCCCGGACATGGAGCAGCCGCAACATGGAGGCGCCAAGGACAGTGTCGCGGGCAATCAGGC TGACCCGCAGGGCCAGCCTCTGCTGAGCAAACCGGGCGACGAGGACGACGCGCCGCCCAAGATGGGGGAG CCGGCGGGCAGCCGCTATGAGCACCCGGGCCTGGGCGCGCAGCAGCAGCCCGCGCCGGTCGCCGTGCCCG GGGGCGGCGGCGGCCCAGCGGCCGTCTCGGAGTTTAATAATTACTATGGCAGCGCTGCCCCTGCTAGCGG CGGCCCCGGCGGCCGCGCTGGGCCTTGCTTTGATCAACATGGCGGACAACAAAGCCCCGGGATGGGGATG ATGCACTCCGCCTCTGCCGCCGCCGGGGCCCCCAGCAGCATGGACCCCCTGCAGAACTCCCACGAAGGGT ACCCCAACAGCCAGTACAACCATTATCCGGGCTACAGCCGGCCCGGCGCGGGCGGCGGCGGCGGCGGCGG CGGAGGAGGAGGAGGCAGCGGAGGAGGTGGAGGAGGAGGAGGAGCAGGAGGAGCAGGAGGAGCAGCGGCA GCGGCAGCAGGAGCCGGAGCTGTGGCGGCGGCGGCCGCGGCGGCGGCGGCAGCAGCAGCAGCAGCAGGAG GAGGCGGTGGCGGCGGCTATGGGAGCTCGTCCTCGGGGTACGGGGTGCTGAGCTCCCCGCGGCAGCAGGG CGGCGGCATGATGATGGGCCCCGGGGGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCGCGGCG GCGGCGGCGGGGGGCTTCCAGCGCTTCGCCGGCCAGAACCAGCACCCGTCGGGGGCTACACCGACCCTCA ACCAGCTGCTCACCTCACCCAGCCCCATGATGAGGAGCTACGGCGGTAGCTACCCCGACTACAGCAGCTC CAGCGCGCCGCCGCCGCCGTCGCAGCCCCAGTCCCAGGCGGCGGCGGGGGCGGCGGCGGGTGGCCAGCAG GCGGCCGCGGGCATGGGCTTGGGCAAGGACCTAGGCGCCCAGTACGCCGCTGCCAGCCCGGCCTGGGCGG CCGCGCAACAAAGGAGTCACCCGGCGATGAGCCCCGGCACCCCCGGACCGACCATGGGCAGATCCCAGGG CAGCCCGATGGACCCAATGGTGATGAAGAGACCTCAGTTGTATGGGATGGGTACTCACCCCCACTCCCAG CCACAGCAGAGCAGCCCATACCCAGGAGGCTCCTACGGTCCCCCAGGTGCACAGCGGTATCCCCTTGGCA TGCAGGGCCGGGCTCCAGGGGCCCTGGGAGGCTTGCAGTACCCGCAGCAGCAGATGCCACCGCAGTACGG ACAGCAAGCTGTGAGTGGCTACTGCCAGCAAGGCCAGCAGCCATACTACAACCAGCAGCCGCAGCCCTCG CACCTCCCGCCCCAGGCACAGTACCTGCAGCCGGCGGCGGCGCAGTCCCAGCAGAGGTACCAGCCACAGC AGGACATGTCTCAAGAAGGCTATGGAACTAGATCTCAGCCTCCTCTGGCCCCTGGAAAATCCAACCATGA AGACTTGAATTTAATTCAACAGGAAAGACCATCGAGTCTACCAGACCTGTCTGGCTCCATCGATGACCTC CCCACGGGAACAGAAGCAACTCTGAGCTCAGCAGTCAGTGCATCCGGGTCTACAAGCAGCCAGGGAGATC AGAGCAACCCAGCGCAGTCTCCTTTCTCCCCACATGCATCACCTCACCTCTCCAGCATCCCTGGAGGGCC GTCACCTTCTCCTGTTGGCTCTCCTGTGGGAAGCAACCAATCGAGGTCTGGTCCGATCTCCCCTGCGAGT ATTCCAGGTAGCCAGATGCCTCCGCAACCACCTGGAAGCCAGTCAGAATCCAGTTCCCATCCTGCCTTGA GCCAGTCACCAATGCCACAGGAAAGAGGTTTTATGACAGGCACTCAGAGAAACCCTCAGATGTCTCAGTA CGGACCTCAGCAGACAGGACCATCCATGTCGCCTCACCCATCTCCTGGGGGCCAGATGCATCCTGGGATC AGTAACTTTCAGCAGAGTAACTCAAGTGGCACGTACGGCCCACAGATGAGCCAGTATGGACCCCAAGGCA ACTACTCCAGAACCCCAACATATAGCGGGGTACCCAGTGCAAGCTACAGCGGCCCAGGGCCCGGTATGGG CATCAATGCCAACAACCAGATGCATGGACAAGGGCCAGCCCAGCCATGTGGTGCTATGCCCCTGGGACGA ATGCCTTCAGCTGGGATGCAGAACAGACCATTTCCTGGAACCATGAGCAGCGTCACCCCCAGTTCTCCTG GCATGTCTCAACAGGGAGGGCCAGGAATGGGCCCACCAATGCCCACTGTGAACCGGAAGGCCCAGGAAGC TGCCGCAGCTGTGATGCAGGCTGCTGCAAACTCAGCACAAAGCAGGCAAGGCAGTTTTCCTGGCATGAAC CAGAGTGGCCTGGTGGCCTCCAGCTCTCCCTACAGCCAGTCCATGAACAACAACTCCAGCCTGATGAGCA CCCAGGCCCAGCCCTACAGCATGACGCCCACAATGGTGAACAGCTCCACAGCATCTATGGGTCTTGCAGA TATGATGTCTCCCAGTGAGTCCAAATTGTCTGTGCCTCTTAAAGCAGATGGTAAAGAAGAAGGCGTGTCC CAGCCTGAGAGCAAGTCAAAGGACAGCTATGGCTCTCAGGGCATTTCCCAGCCTCCAACCCCAGGCAACC TGCCTGTCCCTTCCCCAATGTCTCCCAGCTCTGCCAGCATCTCCTCCTTTCATGGAGATGAGAGTGACAG CATTAGCAGCCCAGGCTGGCCCAAGACACCATCAAGCCCTAAGTCCAGCTCTTCCTCCACCACTGGGGAG AAGATCACGAAGGTCTATGAGCTGGGGAATGAGCCGGAGAGGAAGCTGTGGGTCGACCGTTACCTAACGT TCATGGAAGAGAGGGGCTCCCCGGTGTCCAGTCTGCCAGCAGTGGGCAAGAAGCCCCTGGACCTGTTCCG ACTGTATGTCTGCGTCAAGGAGATTGGAGGTTTGGCGCAGGTTAATAAAAACAAGAAGTGGCGTGAGCTG GCAACCAACCTGAACGTTGGCACTTCCAGCAGCGCAGCCAGCTCTCTGAAAAAGCAGTATATTCAGTACC TGTTCGCCTTTGAGTGCAAAACTGAGCGCGGGGAGGAGCCCCCACCTGAAGTCTTCAGCACCGGGGATTC GAAGAAGCAGCCAAAGCTCCAGCCGCCATCTCCTGCTAACTCAGGATCCTTACAAGGCCCACAGACTCCA CAGTCAACTGGGAGCAATTCGATGGCAGAGGTTCCAGGTGACCTGAAGCCACCAACCCCAGCCTCTACCC CTCATGGACAGATGACTCCCATGCAAAGCGGAAGAAGCAGTACAGTCAGTGTGCATGACCCGTTCTCAGA CGTGAGTGACTCAGCGTACCCAAAACGGAACTCCATGACTCCAAACGCCCCATACCAGCAGGGCATGGGC ATGCCAGACATGATGGGCAGGATGCCCTATGAACCCAACAAGGACCCTTTCAGTGGAATGAGAAAAGTGC CTGGAAGTAGTGAGCCCTTTATGACACAAGGACAGGTGCCCAACAGCGGCATGCAGGACATGTACAACCA GAGCCCCTCAGGGGCCATGTCCAATCTGGGCATGGGACAGCGGCAGCAGTTTCCCTATGGAACCAGTTAT GACCGAAGGCATGAGGCTTACGGACAGCAGTACCCAGGCCAAGGCCCTCCCACAGGACAGCCACCGTATG GAGGACACCAGCCTGGCCTGTACCCACAGCAGCCGAATTACAAACGTCATATGGATGGCATGTACGGGCC TCCAGCCAAGCGGCACGAGGGAGACATGTACAACATGCAGTATGGCAGCCAGCAGCAGGAGATGTATAAC CAGTATGGAGGCTCCTACTCTGGCCCGGACAGAAGGCCCATCCAGGGACAATATCCCTACCCCTACAACA GAGAAAGGATGCAGGGCCCAGGCCAGATGCAGCCACACGGAATCCCACCTCAGATGATGGGGGGCCCCAT GCAGTCATCCTCCAGCGAGGGGCCTCAGCAGAACATGTGGGCTACACGCAACGATATGCCTTATCCCTAC CAGAGCAGGCAAGGCCCGGGCGGCCCTGCACAGGCCCCCCCTTACCCAGGCATGAACCGCACAGATGATA TGATGGTACCTGAGCAGAGGATCAATCACGAGAGCCAGTGGCCTTCTCACGTCAGCCAGCGCCAGCCTTA CATGTCATCTTCGGCCTCCATGCAGCCCATCACGCGCCCACCTCAGTCATCCTACCAGACGCCGCCGTCA CTGCCAAACCACATCTCCAGGGCACCCAGCCCCGCCTCCTTCCAGCGCTCCCTGGAGAGTCGCATGTCTC CAAGCAAGTCTCCCTTCCTGCCCACCATGAAGATGCAGAAGGTCATGCCCACAGTCCCCACATCCCAGGT CACCGGGCCCCCCCCACAGCCTCCACCAATCAGAAGGGAGATTACCTTTCCTCCTGGCTCCGTAGAAGCA TCACAGCCAATCCTGAAACAAAGGCGAAAGATTACCTCAAAAGATATTGTTACTCCCGAGGCGTGGCGTG TGATGATGTCCCTTAAATCGGGTCTGTTGGCTGAGAGCACGTGGGCTCTGGACACCATCAATATTCTCCT CTATGATGACAGCACCGTCGCCACCTTCAATCTTTCCCAGCTGTCTGGATTCCTGGAACTATTAGTAGAG TACTTTCGAAAATGCCTAATTGACATTTTCGGAATTCTTATGGAATATGAAGTGGGTGACCCCAGCCAAA AGGCTCTTGATCACCGTTCAGGGAAGAAAGATGACAGCCAGTCCCTGGAAGATGATTCTGGGAAGGAAGA CGATGATGCTGAGTGTCTTGTGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGACAGTGAAAAGATA GAGTCAGAGGGGAAGAGCAGCCCTGCCCTAGCTGCTCCAGATGCCTCCGTGGACCCCAAGGAGACGCCAA AGCAGGCCAGTAAGTTTGACAAGCTGCCCATAAAGATTGTCAAAAAGAACAAGCTGTTTGTGGTGGACCG GTCCGACAAGCTGGGCCGAGTGCAGGAGTTCAGCAGCGGGCTCCTCCACTGGCAGCTGGGTGGTGGCGAC ACTACCGAGCACATCCAGACTCACTTCGAGAGCAAGATGGAGATCCCTCCTCGCAGGCGTCCACCTCCGC CTCTAAGCTCCACGGGTAAGAAGAAAGAGCTGGAAGGCAAAGGTGATTCTGAAGAGCAGCCAGAGAAAAG TATCATAGCCACCATCGATGACGTCTTGTCTGCCCGGCCAGGGGCTCTGCCTGAAGACACCAACCCAGGA CCCCAGACCGACAGCGGCAAGTTTCCCTTTGGAATCCAGCAGGCCAAAAGCCACCGGAACATCAGGCTCC TGGAAGACGAGCCCAGGAGCCGAGACGAGACGCCGCTGTGCACCATCGCGCACTGGCAGGACTCACTGGC CAAGCGCTGCATCTGTGTGTCGAACATCGTGCGGAGCTTGTCTTTCGTGCCTGGCAACGACGCAGAGATG TCCAAACACCCGGGCTTGGTGCTGATCCTGGGAAAGCTGATTCTGCTGCATCACGAGCATCCGGAGAGAA AGCGGGCGCCACAGACCTATGAGAAGGAGGAGGACGAGGACAAGGGGGTGGCCTGCAGCAAAGATGAGTG GTGGTGGGACTGCCTCGAGGTCTTGCGGGATAACACCCTGGTCACGTTGGCGAACATTTCCGGGCAGCTA GACTTGTCTGCTTACACAGAGAGCATCTGCTTGCCGATCCTGGACGGCTTGCTACACTGGATGGTGTGCC CGTCCGCAGAGGCTCAGGACCCCTTTCCCACTGTGGGGCCCAACTCAGTCCTGTCGCCGCAGAGACTTGT GCTGGAGACCCTGTGTAAACTCAGTATCCAGGACAACAACGTGGACCTGATCTTGGCCACGCCTCCATTT AGTCGTCAGGAGAAATTTTATGCTACATTAGTTAGGTACGTTGGGGATCGCAAAAATCCAGTCTGTCGAG AAATGTCCATGGCGCTTTTATCGAACCTTGCCCAGGGGGACACACTGGCGGCGAGGGCAATAGCTGTGCA GAAAGGAAGCATTGGTAACTTGATAAGCTTCCTAGAGGACGGGGTGACGATGGCGCAGTACCAGCAGAGC CAGCATAACCTTATGCACATGCAGCCCCCACCTCTGGAACCCCCTAGTGTAGACATGATGTGCCGGGCGG CCAAAGCTCTGCTGGCCATGGCCAGAGTGGACGAGAACCGCTCGGAGTTCCTTTTGCACGAGGGTCGGTT GCTGGATATCTCAATATCAGCTGTCCTGAACTCTCTGGTTGCATCTGTCATCTGTGATGTACTGTTTCAG ATTGGGCAGTTATGA
Translation (2244 aa): METGLLPNHKLKAVGEAPAAPPHQQHHHHHAHHHHHHHAHHLHHLHHHHALQQQLNQFQQPQPPQPQQQQ PPPPPQQQHPTANNSLGGAGGGAPQPGPDMEQPQHGGAKDSVAGNQADPQGQPLLSKPGDEDDAPPKMGE PAGSRYEHPGLGAQQQPAPVAVPGGGGGPAAVSEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGM MHSASAAAGAPSSMDPLQNSHEGYPNSQYNHYPGYSRPGAGGGGGGGGGGGGSGGGGGGGGAGGAGGAAA AAAGAGAVAAAAAAAAAAAAAAGGGGGGGYGSSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGAA AAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSSSAPPPPSQPQSQAAAGAAAGGQQ AAAGMGLGKDLGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGTHPHSQ PQQSSPYPGGSYGPPGAQRYPLGMQGRAPGALGGLQYPQQQMPPQYGQQAVSGYCQQGQQPYYNQQPQPS HLPPQAQYLQPAAAQSQQRYQPQQDMSQEGYGTRSQPPLAPGKSNHEDLNLIQQERPSSLPDLSGSIDDL PTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPAS IPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMTGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGI SNFQQSNSSGTYGPQMSQYGPQGNYSRTPTYSGVPSASYSGPGPGMGINANNQMHGQGPAQPCGAMPLGR MPSAGMQNRPFPGTMSSVTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMN QSGLVASSSPYSQSMNNNSSLMSTQAQPYSMTPTMVNSSTASMGLADMMSPSESKLSVPLKADGKEEGVS QPESKSKDSYGSQGISQPPTPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSSTTGE KITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWREL ATNLNVGTSSSAASSLKKQYIQYLFAFECKTERGEEPPPEVFSTGDSKKQPKLQPPSPANSGSLQGPQTP QSTGSNSMAEVPGDLKPPTPASTPHGQMTPMQSGRSSTVSVHDPFSDVSDSAYPKRNSMTPNAPYQQGMG MPDMMGRMPYEPNKDPFSGMRKVPGSSEPFMTQGQVPNSGMQDMYNQSPSGAMSNLGMGQRQQFPYGTSY DRRHEAYGQQYPGQGPPTGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHEGDMYNMQYGSQQQEMYN QYGGSYSGPDRRPIQGQYPYPYNRERMQGPGQMQPHGIPPQMMGGPMQSSSSEGPQQNMWATRNDMPYPY QSRQGPGGPAQAPPYPGMNRTDDMMVPEQRINHESQWPSHVSQRQPYMSSSASMQPITRPPQSSYQTPPS LPNHISRAPSPASFQRSLESRMSPSKSPFLPTMKMQKVMPTVPTSQVTGPPPQPPPIRREITFPPGSVEA SQPILKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVE YFRKCLIDIFGILMEYEVGDPSQKALDHRSGKKDDSQSLEDDSGKEDDDAECLVEEEEEEEEEEEDSEKI ESEGKSSPALAAPDASVDPKETPKQASKFDKLPIKIVKKNKLFVVDRSDKLGRVQEFSSGLLHWQLGGGD TTEHIQTHFESKMEIPPRRRPPPPLSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPG PQTDSGKFPFGIQQAKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEM SKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQL DLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPF SRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLEDGVTMAQYQQS QHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQ IGQL
|