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Report for CCDS20314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20314.1 Public Mus musculus 6 Pcbp1 23 108 98 CCDS HistoryNCBI Gene:23983Re-query CCDS DB by CCDS ID:20314.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053015.6 ENSMUSP00000054863.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053015.6Link to Ensembl Protein Viewer:ENSMUSP00000054863.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053015Re-query CCDS DB by Protein ID:ENSMUSP00000054863
Original member Current member NCBI NM_011865.4 NP_035995.1 Accepted alive Link to Nucleotide Sequence:NM_011865.4Link to Protein Sequence:NP_035995.1Re-query CCDS DB by Nucleotide ID:NM_011865Re-query CCDS DB by Protein ID:NP_035995Link to BLAST:NP_035995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035995.1 356 P60335 356 100% 0 0

Chromosomal Locations for CCDS 20314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86524845 86525915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGACGCCGGTGTGACTGAAAGCGGACTCAACGTGACTCTCACCATTCGGCTGCTGATGCACGGAAAGG
AAGTAGGCAGCATCATCGGGAAGAAAGGGGAGTCGGTGAAGAGGATCCGCGAGGAGAGCGGCGCGCGGAT
CAACATCTCGGAGGGGAACTGCCCGGAGAGGATCATCACGCTGACTGGGCCTACCAATGCCATCTTTAAG
GCCTTCGCCATGATCATCGACAAGCTGGAGGAAGATATCAACAGCTCCATGACCAACAGTACGGCGGCCA
GCAGGCCCCCGGTCACACTTCGGCTGGTCGTGCCCGCCACCCAGTGTGGCTCCCTGATCGGCAAGGGCGG
CTGCAAGATCAAGGAGATCCGCGAGAGCACCGGGGCCCAGGTCCAGGTGGCGGGGGATATGCTGCCCAAC
TCGACCGAGCGGGCTATCACTATCGCCGGCGTGCCGCAGTCCGTCACCGAGTGTGTGAAGCAGATCTGCC
TGGTCATGCTGGAGACGCTCTCCCAGTCTCCACAGGGGAGAGTCATGACCATCCCGTACCAGCCCATGCC
GGCCAGCTCGCCAGTCATCTGCGCGGGCGGCCAAGATCGCTGCAGCGACGCGGCGGGCTACCCCCACGCC
ACCCACGACCTGGAGGGACCACCTCTAGACGCCTACTCGATTCAAGGACAACACACCATTTCTCCGCTGG
ATCTGGCCAAGCTGAACCAGGTGGCAAGACAACAGTCTCACTTTGCCATGATGCACGGCGGGACGGGATT
CGCCGGAATTGACTCCAGCTCTCCAGAGGTGAAAGGCTATTGGGCAAGTTTGGATGCATCTACTCAAACC
ACCCATGAACTCACCATTCCAAATAACTTAATCGGCTGCATAATCGGGCGCCAAGGCGCCAACATCAATG
AGATCCGCCAGATGTCCGGGGCCCAGATCAAAATTGCCAACCCGGTGGAAGGCTCTTCTGGAAGGCAGGT
CACTATTACTGGCTCGGCTGCCAGTATTAGCCTGGCCCAGTATCTAATCAATGCCAGGCTTTCCTCTGAG
AAGGGGATGGGGTGCAGCTAG

Translation (356 aa):
MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFK
AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN
STERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHA
THDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQT
THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
KGMGCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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